View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19446_high_6 (Length: 375)
Name: NF19446_high_6
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_high_6 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 39575433 - 39575790
Alignment:
| Q |
18 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39575433 |
cagaaaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
39575532 |
T |
|
| Q |
118 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttcagtttcccagaggcgtcggat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39575533 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccaacacattaggttgtacggtaaccttcagtttcccagaggcatcggat |
39575632 |
T |
|
| Q |
218 |
tgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaatctg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39575633 |
tgaaccacaaaatcataataataaggcatttgtagtgacaaacttgtgtcattattgacattcacaacataattgtcataaattaagagaaggaaatctg |
39575732 |
T |
|
| Q |
318 |
tcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatc |
375 |
Q |
| |
|
| |||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
39575733 |
taagaccagattgtcgattactgaaaacgtcacaaaaatgaaacctaagaaaatgatc |
39575790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 39520794 - 39521148
Alignment:
| Q |
18 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
117 |
Q |
| |
|
|||| |||| ||||| ||||||||| || ||||||| ||| ||||||||||||| ||| |||||||||||||| ||||||| || || | |
|
|
| T |
39520794 |
cagaaaccaaaactacacctccaaccactgaacccaccactacaggaagactaaccttt---gaatccaaatcatcgaagggaatttcactagattgttc |
39520890 |
T |
|
| Q |
118 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttcagtttcccagaggcgtcggat |
217 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
39520891 |
aatcactttcattagttctagcccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcaggttcccagaggcatcggat |
39520990 |
T |
|
| Q |
218 |
tgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaatctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39520991 |
tgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtcattattgacattcacaacataagtgtcataaattaagagaaggaaatctg |
39521090 |
T |
|
| Q |
318 |
tcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521091 |
tcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatc |
39521148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 375
Target Start/End: Original strand, 39524292 - 39524642
Alignment:
| Q |
31 |
taaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaaccactgtcatt |
130 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||| || || || | || |||| ||||| |
|
|
| T |
39524292 |
taaacctccaatcaccgaacccaccaccacaggaagactaatcttcctcgaatccgaatcatcattgggaattgggcctgatgattcaatcactttcatt |
39524391 |
T |
|
| Q |
131 |
agttctagtccatttaaaaatgcgttcggt------acaaaatccgacacattaggttgtacggtaaccttcagtttcccagaggcgtcggattgaacca |
224 |
Q |
| |
|
|||||||| || |||||||| || |||||| || | |||| ||||||| |||| ||||||||| | || ||| ||| || |||||| |
|
|
| T |
39524392 |
agttctagcccgtttaaaaaagcattcggtctagcaacctcaaccgaagtattaggtactacgctaaccttcaatagtcctgagctgtctgaacgaacca |
39524491 |
T |
|
| Q |
225 |
caaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaaggaaatctgtcagacc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||| ||||| | ||||||| ||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
39524492 |
caaaatcataataataaggcatctgtagtgacaaactttggttatcatttacatttataacataactgtcataaacgaagagaatgaaagttgtaagacc |
39524591 |
T |
|
| Q |
325 |
agactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatc |
375 |
Q |
| |
|
|| |||| ||| |||||||| |||||| ||||||| | |||| |||||||| |
|
|
| T |
39524592 |
agtctgttgatcactaaaaatgtcacaaaaatgaagcataaggaaatgatc |
39524642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 39510712 - 39510899
Alignment:
| Q |
188 |
gtaaccttcagtttcccagaggcgtcggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacat |
287 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| ||||||| || ||||||| |
|
|
| T |
39510712 |
gtaaccttcaacatcccagagccatcggattgaaccacgaaatcataataataaggcatctgtattgacaggctagtgtcattattgatatatacaacat |
39510811 |
T |
|
| Q |
288 |
aagtgtcataaattaagagaaggaaatctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaaacctaagtaaatgatc |
375 |
Q |
| |
|
|| |||||||||| |||||| |||| ||| ||| |||||||||||| |||||||| |||||||||||||| ||| || |||||||| |
|
|
| T |
39510812 |
aactgtcataaatgaagagattgaaagttgtaagagcagactgtcgatcactaaaaatgtcacagaaatgaagcctgaggaaatgatc |
39510899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 39579969 - 39580314
Alignment:
| Q |
18 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaat------ccaaatcatcagggggaattggacccga |
111 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||| ||| || ||||||| ||||||| |||| |||||||||||| ||| ||| ||| || |
|
|
| T |
39579969 |
cagaaaccagagctaaacctccaagaaccgaacccaacacaaccggaagacgaatcttctttgaattggaacccaaatcatcagaggggattaaacctga |
39580068 |
T |
|
| Q |
112 |
ggagttaaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttcagtttcccagaggcg |
211 |
Q |
| |
|
| | || |||| ||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||| || ||||||||||| | | |||| |
|
|
| T |
39580069 |
tggttcaatcactttcattagttctagcccatttaaaaatgcattcggtacaaaatcggtcacattaggttttatggtaaccttcaataggctagagtta |
39580168 |
T |
|
| Q |
212 |
tcggattgaaccacaaaatcataataataaggcatctgtagtgacaaacttgtgtctttattgacattcacaacataagtgtcataaattaagagaagga |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||| || | ||| ||||| | ||||||| |||| |||| |||||| || |
|
|
| T |
39580169 |
tcggaacgaaccacaaaatcataataataaggcatctgtattgacaaactttggttatcatttacatttataacataactgtc--aaatgaagagagtga |
39580266 |
T |
|
| Q |
312 |
aatctgtcagaccagactgtcgattactaaaaacgtcacagaaatgaa |
359 |
Q |
| |
|
|| ||| | |||||| ||||||| | |||||| |||||| ||||||| |
|
|
| T |
39580267 |
aaaatgtaaaaccagattgtcgatcattaaaaatgtcacataaatgaa |
39580314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 39543580 - 39543712
Alignment:
| Q |
28 |
aactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaaccactgtc |
127 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||| | | |||||||| |||| ||||||||||| || || |||| || |||| |
|
|
| T |
39543580 |
aactaaacctccaaccaccgaacccaccaccacaggaagattaatctttctcaaatccaaaccatctaagggaattggactggacgatttaatcattgtc |
39543679 |
T |
|
| Q |
128 |
attagttctagtccatttaaaaatgcgttcggt |
160 |
Q |
| |
|
|||||||||| || ||||||||||| |||||| |
|
|
| T |
39543680 |
attagttctatcccgtttaaaaatgccttcggt |
39543712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 39510541 - 39510676
Alignment:
| Q |
23 |
accagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaacca |
122 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||| |||||| ||||||||| || || | || || |
|
|
| T |
39510541 |
accaaaactaaacctccaacaaccgaacccaccaccacaggaagactaacctt---cgaatccatatcatccgggggaatttcactagattgttcaatca |
39510637 |
T |
|
| Q |
123 |
ctgtcattagttctagtccatttaaaaatgcgttcggta |
161 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39510638 |
cttccattagttctagcccatttaaaaatgcattcggta |
39510676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University