View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_high_7 (Length: 330)
Name: NF19446_high_7
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 143 - 320
Target Start/End: Original strand, 26661746 - 26661926
Alignment:
| Q |
143 |
ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttcc |
239 |
Q |
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| T |
26661746 |
ccactgtttggcaattcttgttttttcccaatcatgaatcaatgaaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaactttttc |
26661845 |
T |
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| Q |
240 |
caaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagtctgtg |
320 |
Q |
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| T |
26661846 |
caaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtg |
26661926 |
T |
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Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 21481663 - 21481839
Alignment:
| Q |
143 |
ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnggtt-agagacaacttgtttttattaacccaccttc---taactttt |
237 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
21481663 |
ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt |
21481762 |
T |
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| Q |
238 |
cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21481763 |
cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag |
21481839 |
T |
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