View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_low_1 (Length: 636)
Name: NF19446_low_1
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Complemental strand, 10340462 - 10339854
Alignment:
| Q |
10 |
attattctcataactgtggtggatactgctctcatagtttagtgataagtggactggttggttatgtaacccttaagtttaaatacaactgtagtcggag |
109 |
Q |
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| T |
10340462 |
attattctcataactgtggtggatactgctctcatagtttagtgataagtggacaggttggttatgtaacccttaagtttgaatacaactgtagtcggag |
10340363 |
T |
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| Q |
110 |
acgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaactagataactattctaac |
209 |
Q |
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| T |
10340362 |
acgtagacacaattgttaaaactccatgatcaaatatcgtgttattctctgtttgtgtttttcacatccttttacttttgaactagataactgttctaac |
10340263 |
T |
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| Q |
210 |
acagtagtttcaaaggcctcaaaataaaccatagttttgtttgtgggataaagggtactcaagttgcaatcttggacttcttgtgcatttttcgtgctgc |
309 |
Q |
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| T |
10340262 |
acagtagtttcaaaggcctcaaaataaaccacagttttgtttgtgggataaagggtactcaagttgcaatcttggacttcttgtgcaattttcgtgcttc |
10340163 |
T |
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| Q |
310 |
ttatcatgcagcatataccttattttcaggcagttgaannnnnnnnnattacaatgaattttatgcaaagtagttctaaatagaatttgtaactagtatt |
409 |
Q |
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| T |
10340162 |
ttatcatgcagcatataccttattttcaggcagttgaatttttttttattacaatgaattttatgcaaagtagttctaaatagaatttgtaactagtatt |
10340063 |
T |
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| Q |
410 |
tacagaatttaattatgcactgatagtccaaaactgtttnnnnnnnnnnnnntattatacatccaaccatgtcataaagagttgatttcattcaaagagc |
509 |
Q |
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| T |
10340062 |
tacagaatttaattatgcactgatagtccaaaactgtttaaaaaaaaataaatattatacatccaaccatgtcataaagagttgatttcattcaaagagc |
10339963 |
T |
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| Q |
510 |
ttcattcatctaactagtattattcctcagatggaattagtacaaaaacgcttcaaattctcatgctatatgtatatgagcttttcctttccacaattta |
609 |
Q |
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| T |
10339962 |
ttcattcatctaactagtattattcctcagatggaattagtacaaaaacgcttcaaattctcatgctatatgtatatgagcttttcctttccacaattta |
10339863 |
T |
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| Q |
610 |
gatttacct |
618 |
Q |
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| T |
10339862 |
gatttacct |
10339854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 28026992 - 28026908
Alignment:
| Q |
108 |
agacgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaact |
193 |
Q |
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| T |
28026992 |
agacgtagccacaattggccgaactccacgatcaaatatcttgt-gttctctatttgtgtttttcgtatctttttacttttgaact |
28026908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 11319430 - 11319526
Alignment:
| Q |
98 |
ctgtagtcggagacgtagacacaattattcaaactccatgatcaaatatcgtgttgttctctgtttgtgtttttcacatccttttacttttgaactag |
195 |
Q |
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| T |
11319430 |
ctgtagttggaggcgtaggcacaattagctgaactccgtgatcaaatctcgtgt-gttctttgcttgtgtttttcgtatctgtttacttttgaactag |
11319526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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