View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19446_low_12 (Length: 249)

Name: NF19446_low_12
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19446_low_12
NF19446_low_12
[»] chr2 (3 HSPs)
chr2 (1-241)||(26662190-26662436)
chr2 (106-174)||(26666243-26666311)
chr2 (106-175)||(26662004-26662073)
[»] chr1 (2 HSPs)
chr1 (1-241)||(22902446-22902695)
chr1 (106-241)||(46886001-46886135)
[»] chr6 (1 HSPs)
chr6 (6-167)||(19702429-19702600)
[»] scaffold0586 (2 HSPs)
scaffold0586 (171-241)||(2985-3055)
scaffold0586 (1-85)||(10175-10265)
[»] chr8 (4 HSPs)
chr8 (171-241)||(10638565-10638635)
chr8 (171-241)||(32716976-32717046)
chr8 (1-44)||(10638221-10638264)
chr8 (5-44)||(32717347-32717386)
[»] chr7 (1 HSPs)
chr7 (17-84)||(38935512-38935585)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26662190 - 26662436
Alignment:
Q  1 ttagcaacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatttagcattctt 94  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||      |||||||||||||||||||||||||||| |||||| |||||  |||||||    
T  26662190 ttagtaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatttgacattctt 26662289  T
Q  95 ttgtttccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatttggatgtttgtgctctgttt 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26662290 ttgtttccatcatgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatatttggatgtttgtgctctgttt 26662389  T
Q  195 agaatgttatatatggtgtaattcctatgtctctaatatagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26662390 agaatgttatatatggtgtaattcctatgtctctaatatagtattat 26662436  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 26666243 - 26666311
Alignment:
Q  106 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatt 174  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26666243 atgatgttcccaagtgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatatt 26666311  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 26662004 - 26662073
Alignment:
Q  106 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatattt 175  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26662004 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcattatatattt 26662073  T

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Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22902446 - 22902695
Alignment:
Q  1 ttagcaacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatttagcattctt 94  Q
    ||||||| |||||||| ||||| || ||||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  22902446 ttagcaatttgatagtgaaaatctgtaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgacattctt 22902545  T
Q  95 ttgttt---ccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatttggatgtttgtgctctg 191  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  22902546 ttgttttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtatttggatgtttgtgctctg 22902645  T
Q  192 tttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22902646 tttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 22902695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 46886135 - 46886001
Alignment:
Q  106 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcactatatatttggatgtttgtgctctgtttagaatgttata 205  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  46886135 atgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt-ggatgtttgtcctctgtttagaatgttata 46886037  T
Q  206 tatggtgtaattcctatgtctctaatatagtattat 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  46886036 tatggtgtaattcctatgtctctaatatagtattat 46886001  T

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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 19702429 - 19702600
Alignment:
Q  6 aacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatttagca-ttcttttgt 98  Q
    ||||||||||| ||||| |||||||||||||||||||||      ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  19702429 aacttgatagtgaaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatttggcaattcttttgt 19702528  T
Q  99 tt---ccatcatgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttagaatcact 167  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  19702529 tttttccatcatgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

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Target: scaffold0586 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 2985 - 3055
Alignment:
Q  171 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2985 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 3055  T

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Target: scaffold0586; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10175 - 10265
Alignment:
Q  1 ttagcaacttgatagtcaaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaattt 85  Q
    |||||||||||||||| ||||| |||||||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||||    
T  10175 ttagcaacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaattt 10265  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 10638565 - 10638635
Alignment:
Q  171 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10638565 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 10638635  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 32717046 - 32716976
Alignment:
Q  171 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717046 tatttggatgtttgtgctctgtttagaatgttatatatggtgtaattcctatgtctctaatatagtattat 32716976  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10638221 - 10638264
Alignment:
Q  1 ttagcaacttgatagtcaaaatatgcaagatgtggtacataatc 44  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||    
T  10638221 ttagcaatttgatagtgaaaatctgcaagatgtggtacataatc 10638264  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 32717386 - 32717347
Alignment:
Q  5 caacttgatagtcaaaatatgcaagatgtggtacataatc 44  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  32717386 caacttgatagtgagaatatgcaagatgtggtacataatc 32717347  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 38935512 - 38935585
Alignment:
Q  17 caaaatatgcaagatgtggtacataatc------aagtagtatgatgttcaatgttacatctctgtgcacaatt 84  Q
    |||||| ||||||||| |||||||||||      |||||||||| | |||||||||| ||||||||||||||||    
T  38935512 caaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt 38935585  T

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