View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_low_3 (Length: 466)
Name: NF19446_low_3
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 52578596 - 52578140
Alignment:
| Q |
1 |
catcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattccacttcannnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52578596 |
catcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattctacttcatttttttt |
52578497 |
T |
|
| Q |
101 |
nnn---aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaataaatcatgccacataaattcaaag |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52578496 |
ttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaataaatcatgccacataaattcaaag |
52578398 |
T |
|
| Q |
198 |
gttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578397 |
gttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatgg |
52578298 |
T |
|
| Q |
298 |
atagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcata |
397 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578297 |
atagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcata |
52578198 |
T |
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| Q |
398 |
tattttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578197 |
tattttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
52578140 |
T |
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