View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_low_4 (Length: 443)
Name: NF19446_low_4
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 52579000 - 52578602
Alignment:
| Q |
20 |
ttcatgacatggtcaatctctattctctactgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcactacaagacctggaaca |
119 |
Q |
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| T |
52579000 |
ttcatgacatggtcaatctctattctcttctgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcaccacaagacctggaaca |
52578901 |
T |
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| Q |
120 |
gcatcacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatttttctcatctataaatttagaaatata |
219 |
Q |
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| T |
52578900 |
gcatcacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatgtttctcatctataaatttagaaatata |
52578801 |
T |
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| Q |
220 |
cttccaacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatcatcatatcatatgactctcaatatgg |
319 |
Q |
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| T |
52578800 |
cttccaacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatga---------------ctcaatatgg |
52578716 |
T |
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| Q |
320 |
tattctatattgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaata |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578715 |
tattctatattgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaata |
52578616 |
T |
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