View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_low_5 (Length: 435)
Name: NF19446_low_5
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Complemental strand, 700262 - 699858
Alignment:
| Q |
21 |
ctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatatttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700262 |
ctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatatttt |
700163 |
T |
|
| Q |
121 |
ccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatt |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700162 |
ccatcaggcaaaacccatgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaatt |
700063 |
T |
|
| Q |
221 |
tatcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700062 |
tatcaggaaaaggcgataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtcc |
699963 |
T |
|
| Q |
321 |
atccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataaggg |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
699962 |
atccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataaggg |
699863 |
T |
|
| Q |
421 |
ttcat |
425 |
Q |
| |
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||||| |
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|
| T |
699862 |
ttcat |
699858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 23261861 - 23262265
Alignment:
| Q |
21 |
ctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatatttt |
120 |
Q |
| |
|
||||||||| || ||||| || ||||||||||| ||||| ||||| ||||| | | |||||| ||||| |||||| | || ||||| || |||||||| |
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| T |
23261861 |
ctgaggtaccctagagtgattttggtaagcaagattaagcgctgccctatgcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttc |
23261960 |
T |
|
| Q |
121 |
ccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatt |
220 |
Q |
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||||||||||| | ||| |||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| || | | ||||||| | |
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|
| T |
23261961 |
ccatcaggcaacacccaagcatttgtttgaccatacatagtctcaggcctcaacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaact |
23262060 |
T |
|
| Q |
221 |
tatcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtcc |
320 |
Q |
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| ||||||||||| || |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |
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| T |
23262061 |
tctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgcggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtcc |
23262160 |
T |
|
| Q |
321 |
atccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataaggg |
420 |
Q |
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|||||| |||||||||| ||||||||||||||| ||||||||||| || | | |||||| |||||||| |||||||||||||||| |||||||||||| |
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|
| T |
23262161 |
atccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccagacgccttcaacttcctcatatgccacctaacaaaagcatcaaaataagga |
23262260 |
T |
|
| Q |
421 |
ttcat |
425 |
Q |
| |
|
||||| |
|
|
| T |
23262261 |
ttcat |
23262265 |
T |
|
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