View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_low_8 (Length: 325)
Name: NF19446_low_8
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 35075944 - 35075651
Alignment:
| Q |
16 |
atctacaatatttatttatattaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatgacagaaactcggttacta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075944 |
atctacaatatttatttatattaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatgacagaaactcggttacta |
35075845 |
T |
|
| Q |
116 |
aaaaacttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtccttgcacaactattttttataggcatataacaaaaaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35075844 |
aaaaacttgagagcacaatacattccaatgaaatatgcaaaattgttggtattttcaatgtccttgcacaactattttttataggcagataacaaaaaac |
35075745 |
T |
|
| Q |
216 |
accactatttattttcaaactgatatatagattgaagcaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaact |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075744 |
accactatttattttcaaactgatatatagattgaagtaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaact |
35075651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 35102059 - 35101768
Alignment:
| Q |
16 |
atctacaatatttatttatattaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatgacagaaactcggttacta |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35102059 |
atctacaatatttatttaaattaacacccatgcagtgcagatgcacaatgcaaattcattttataaccagcaaaacaatatgacagaaactcggttacta |
35101960 |
T |
|
| Q |
116 |
aaaaacttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtccttgcacaactattttttataggcatataacaaaaaac |
215 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
35101959 |
aaaaacttgagagcgcaatacattccaatgaaatatgcaaaattgttggtattttcaatgtccttgcacaactatttttcataggcagataacaaaaaac |
35101860 |
T |
|
| Q |
216 |
accactatttattttcaaactgatatatagattgaagcaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaa |
307 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35101859 |
accactatttattttgaaattgatatatagattgaagcaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaa |
35101768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 23095642 - 23095700
Alignment:
| Q |
218 |
cactatttattttcaaactgatatatagattgaagcaaaaaacaacactattttaaaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23095642 |
cactatttattttcaaactgatatatagattgaagcaaaaaacagtactattttaaaca |
23095700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 13763485 - 13763394
Alignment:
| Q |
216 |
accactatttattttcaaactgatatatagattgaagcaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaa |
307 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
13763485 |
accactatttattttcaattttatatatagattaaagcaaacaacactgctattttaaccatttatattgttgacatataatacaacaaaaa |
13763394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 23095587 - 23095642
Alignment:
| Q |
122 |
ttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtc |
177 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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|
| T |
23095587 |
ttgagagcacaatacatttcaatgaaatatgcaaaattgttggtattttcaatgtc |
23095642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 37589296 - 37589004
Alignment:
| Q |
17 |
tctacaatatttatttatattaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatgacagaaactcggttactaa |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
37589296 |
tctacaatatttatttaacttaacacccatgcagtgcagatgcacagtgcaaattcattttatcaccagcaaaacaatatgatagaaacttggttactaa |
37589197 |
T |
|
| Q |
117 |
aaaacttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtccttgcacaactattttttataggcatataacaa--aaaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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|
| T |
37589196 |
aaaacttgagggcacaatacattcaaataaaatatacaaaattgttggtattttcaatgtccttgcacaactatttttcataggcagataacaaaaaaaa |
37589097 |
T |
|
| Q |
215 |
caccactatttattttcaaactgatatatagattgaagcaaaaaacaacactattttaaacatttatattgttgacatataatatagcaaaaa |
307 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
37589096 |
caccactatttattttcaaactaatatatagattgaagcaaaaaacaccactattttaaacatttttattgttgacatataatatagcaaaaa |
37589004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 16679139 - 16679334
Alignment:
| Q |
17 |
tctacaatatttatttatattaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatgacagaaactcggttactaa |
116 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
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|
| T |
16679139 |
tctacactatttatttaacttaacacccatgcagtgcaaatgcacactgcaaattcattttatcaccagcaaaatagtatgacagaaactcagttactaa |
16679238 |
T |
|
| Q |
117 |
aaaacttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtccttgcacaactattttttataggcatataacaaaa |
212 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||| |
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|
| T |
16679239 |
aatacttgagagcacagtacattccaatgaaatatgcaaaattgttggtattttcaatgtccttgcacaactattattcataggcagataacaaaa |
16679334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 441655 - 441597
Alignment:
| Q |
119 |
aacttgagagcacaatacattccaatgaaataagcaaaattgttggtaatttcaatgtc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
441655 |
aacttgagagcacaatacattccaatgaaatatgcaaaattgttggtattttcaatgtc |
441597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 441597 - 441556
Alignment:
| Q |
218 |
cactatttattttcaaactgatatatagattgaagcaaaaaa |
259 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| |
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| T |
441597 |
cactatttattttcataatgatatatagattgaagcaaaaaa |
441556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 49696734 - 49696796
Alignment:
| Q |
36 |
ttaacacccatgtagtgcagatgcacaatgcaaattcattttatcaccagcaaaacaatatga |
98 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| |
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|
| T |
49696734 |
ttaacacccatgcagtgcagatgcacagtgcaaactcattttatcatcagcaaaacaatatga |
49696796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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