View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19446_low_9 (Length: 288)
Name: NF19446_low_9
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_low_9 |
 | |
|
| [»] scaffold0521 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 110 - 277
Target Start/End: Original strand, 35076112 - 35076280
Alignment:
| Q |
110 |
gttctgacctgtttgtgagtttgtcttcagtgttcnnnnnnnnnn-aattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35076112 |
gttctgacctgtttgtgagtttgtcttcagtgttctttttttttttaattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaattt |
35076211 |
T |
|
| Q |
209 |
aaaaaactataataaatagatatctcaatttcaattccaattacgatttgcttgctgcttgttgttgat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35076212 |
aaaaaactataataaatagatatctcaatttcaattccaattacgatttgcttgctgcttgttgttgat |
35076280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 35075921 - 35076031
Alignment:
| Q |
1 |
ttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcgcttttgtgtgttgtctttaatctctataccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35075921 |
ttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcacttttgtgtgttgtctttaatctctataccttt |
35076020 |
T |
|
| Q |
101 |
tagtgtggtgt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
35076021 |
tagtgtggtgt |
35076031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35102036 - 35102140
Alignment:
| Q |
1 |
ttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctcgcttttgtgtgttgtctttaatctctataccttt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35102036 |
ttaatttaaataaatattgtagattttgttgcatgttaataagtgtagggtgtgtggctgtttctcgcttttgtgtgctgtctttaatctctataccttt |
35102135 |
T |
|
| Q |
101 |
tagtg |
105 |
Q |
| |
|
||||| |
|
|
| T |
35102136 |
tagtg |
35102140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 35102225 - 35102340
Alignment:
| Q |
110 |
gttctgacctgtttgtgagtttgtcttcagtgttcnnnnnnnnnnaattacggtaggtcttgcctaaaacagtgtgataaatatttaatgacggaattta |
209 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
35102225 |
gttctaacctgtttgtgagtttgtcttaagtgttttttttttttaaattatggtaggtcttgcctgagacagtgtgataaatatttaatgacggaattta |
35102324 |
T |
|
| Q |
210 |
aaa-aactataataaa |
224 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
35102325 |
aaacaactataataaa |
35102340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 2811 - 2770
Alignment:
| Q |
155 |
aattacggtaggtcttgcctaaaacagtgtgataaatattta |
196 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
2811 |
aattacggtaggtcttgcctaccatagtgtgataaatattta |
2770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 18288951 - 18288910
Alignment:
| Q |
155 |
aattacggtaggtcttgcctaaaacagtgtgataaatattta |
196 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
18288951 |
aattacggtaggtcttgcctaccatagtgtgataaatattta |
18288910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 49696724 - 49696675
Alignment:
| Q |
7 |
taaataaatattgtagattttgttgcatgt-taataagtgtaggttgtgt |
55 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
49696724 |
taaataaataatgtatattttgttgcatgtcaaataagtgtaggttgtgt |
49696675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University