View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_high_11 (Length: 229)
Name: NF19447_high_11
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 12514355 - 12514160
Alignment:
| Q |
15 |
cagagaaaactctcacaaaggtctctctctttgccttctgcattaaattgcattgagaaagagttgttggactttgctagttaagtgtgtaggccaataa |
114 |
Q |
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| T |
12514355 |
cagagaaaactctcacaaaggtctctctctttgccttctgcattaaattgcattgagaaagagttgttggactttgctagttaagtgtgtaggccaataa |
12514256 |
T |
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| Q |
115 |
gtttaattttttagttgtataaaacaaatttagttaggaggaaagagcactatcacgattccatacacttgttcagtaaaacaaaattcatgtattaac |
213 |
Q |
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| T |
12514255 |
gtttaattttttagttgtataaaacaaatttagtt---aggaaagagcactatcacgattcactacacttgttcagtaaaacaaaattcatgtattaac |
12514160 |
T |
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