View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_high_5 (Length: 397)
Name: NF19447_high_5
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 34872490 - 34872124
Alignment:
| Q |
16 |
aatatggaggtagaggcgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgcccgtcaaagttgtgcctcttcggtctg |
115 |
Q |
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| T |
34872490 |
aatatggaggtagaggtgagcaactctctcaaggggaatagggtggagcctgttgacaaagggaagaatgtgcccgtcaaagttgtgcctcttcagtctc |
34872391 |
T |
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| Q |
116 |
agggagaggatctgctccagctgttgaacgtgcggtccgatcctgatcgatatggcccccactcgaccatttgccgcagtgatctaaagctgaaggttat |
215 |
Q |
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| T |
34872390 |
agggagaggatttgctccaactgttgaacgtgtggtccgatcctgatcgatatggcccccactcgaccatttgccgcagtgatctaaagctgaaggttat |
34872291 |
T |
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| Q |
216 |
tcaagacctgggaaccgctggccggggtaaaactgcaatgactaaaggttattcaaagtgtctacatatgcatcatgagttcttctcctaaaattttcaa |
315 |
Q |
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| T |
34872290 |
tcaagacctgggaaccgctggccggagcaaaactgcaatgactgaaggttattcaaagtgtctacatatgcatcatgagttcttttcctaaaattttcaa |
34872191 |
T |
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| Q |
316 |
ttatg--tgtgggctatttaccgtgtcctatagnnnnnnnattttgacgtttctccgtgcctatttt |
380 |
Q |
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| T |
34872190 |
ttatgtgtgtgtgctatttaccgtgtcctgcagtttttttattttgacgtttctccgtgcctatttt |
34872124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 34873391 - 34873500
Alignment:
| Q |
273 |
gtgtctacatatgcatcatgagttcttctcctaaaattttcaattatgtgtggg--ctatttaccgtgtcctatagnnnnnnnattttgacgtttctccg |
370 |
Q |
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| T |
34873391 |
gtgtctacatatgcatcacgagttcttttattaaaatttttaattatgtgtgtgcactatttaccatgtcctacagtttttttattttgacgtttctgcg |
34873490 |
T |
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| Q |
371 |
tgcctatttt |
380 |
Q |
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| T |
34873491 |
tgcctatttt |
34873500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 34874981 - 34875017
Alignment:
| Q |
281 |
atatgcatcatgagttcttctcctaaaattttcaatt |
317 |
Q |
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| T |
34874981 |
atatgcatcatgagttcttttcctaaaattttcaatt |
34875017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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