View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_low_1 (Length: 618)
Name: NF19447_low_1
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 3 - 601
Target Start/End: Complemental strand, 41061352 - 41060755
Alignment:
| Q |
3 |
agatggacatcatcagttgatgaagcagagaaggatggtagttgtgcaccttggtggggataatgtacctgcaaacatttcaacgctcaagtcagttttt |
102 |
Q |
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| T |
41061352 |
agatcgacatcatgagttgatgaagcagagaaggatggtagttgtgcaccttggtggggataatgtacctgcaaacatttcaacgctcaagtcggttttt |
41061253 |
T |
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| Q |
103 |
gagtgagttggctgagaggttttgcataatagaatgcgaacaattatcttgttgcatgtccccttctataggtagggtttcgagagaatcgggcaaaaac |
202 |
Q |
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| T |
41061252 |
gagtgagttggctgagaggttttgcataatagaatgcgaacatttattttggtgcatgtccccttctataggtagggtttcaagagaatcgggcaaaaac |
41061153 |
T |
|
| Q |
203 |
ccatttcaagtgttgagtgattctcaatgtgattcacgaatcagcatctagtgtcgataatgtggtgattggtggacaaatacgctagggtgtgttagca |
302 |
Q |
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| T |
41061152 |
ccatttcaagtgttgagtgattctcgatgtgattcacgaatcagcatctagtgtcgataatgtggtgattggtggacaaatacgctagggtgtgttagca |
41061053 |
T |
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| Q |
303 |
gtgcagcttcctagcgtgcatctctgcagtagattaagaattgatcatttgtctggtccgtaacaaagagtaatgtatctagttcctttggcccaaaata |
402 |
Q |
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| T |
41061052 |
gtgcagcttcctagcgtgcatctctgcagtagattaagaattgatcatttgtctggtccgaaacaaagagtaatgtatctagttcctttggcccaaaata |
41060953 |
T |
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| Q |
403 |
tcgtgtatttagttcagttaagatcatgtttaacagcattatcattatgtatactatatggtgcatacaggttataatcttatgactatttaacaataca |
502 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41060952 |
tcgcgtatttagttcagttaagatcatgtttaacagcattatcattatgtatactctatggtgtatacaggttataatcttatgactatttaacaataca |
41060853 |
T |
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| Q |
503 |
gtgcgaaggagaggacagtaggggcctttcacgttttcagtgcccaaataaatcaataactaaaatctttattaaaatattccccttttcagtaaaaaa |
601 |
Q |
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| T |
41060852 |
gtgcgaaggagaggacagtaggggcatttcacgttttcagtgcccaaataaatcaataactaaaatctttattaaaatatt-cccatttcagtaaaaaa |
41060755 |
T |
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