View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_low_12 (Length: 211)
Name: NF19447_low_12
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_12 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 44137466 - 44137668
Alignment:
| Q |
1 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44137466 |
tcactctcgttctatcatggataacgctttaacaacatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
44137565 |
T |
|
| Q |
101 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctttccaagatggggtttaatgctaaatggatttcttggatgatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44137566 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctttccaagatggggtttaatgctaaatggatttcttggatgatga |
44137665 |
T |
|
| Q |
201 |
tgt |
203 |
Q |
| |
|
||| |
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| T |
44137666 |
tgt |
44137668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27645747 - 27645580
Alignment:
| Q |
1 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
100 |
Q |
| |
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|||||| || |||||||||||||| |||||||| || ||||| | | || |||||||| ||||||| ||||| ||||||||||| || ||| |||| |
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| T |
27645747 |
tcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattggtgaggtggctctgaaa |
27645648 |
T |
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| Q |
101 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctttccaagatggg |
168 |
Q |
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| T |
27645647 |
cttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctattcttgacaagatggg |
27645580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 13190706 - 13190645
Alignment:
| Q |
5 |
tctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaa |
66 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| | ||| ||||||||||| ||||| |
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| T |
13190706 |
tctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa |
13190645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 12461173 - 12461017
Alignment:
| Q |
1 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
100 |
Q |
| |
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|||||||||||| |||| ||||||||| || || || || |||| | |||||||||||||| ||| |||||||||| ||||| ||||||||||| |
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| T |
12461173 |
tcactctcgttccatcacggataacgcattgactgctttcgagatcttgcaccatatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaa |
12461074 |
T |
|
| Q |
101 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctt |
157 |
Q |
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| || || || || || ||||||||||| || ||||| || ||| ||| ||||||| |
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| T |
12461073 |
cttgatatatccaaagcatttgacagtgtcagctggtcttatcttcaagttattctt |
12461017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 7272722 - 7272914
Alignment:
| Q |
11 |
tctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatct |
110 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||| ||| |||| ||||||||| || |||||| ||||||||||| |||||||| ||||||| | |
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| T |
7272722 |
tctatcatggataacgctttaacgacgtttgagactctccgccacatgctttgcaaaagaaatggaaaatttggtgaagtttctttgaagctagacatat |
7272821 |
T |
|
| Q |
111 |
ctaaggcttttgacagtgtaagttggtcctaccttgaagctattctttccaagatggggtttaatgctaaatggatttcttggatgatgatgt |
203 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7272822 |
ctaaagcttttgacattgtaagttggtcctaccttgaagctattcttaccaagatggggtttaatgctaaatggatttcatggaggatgatgt |
7272914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 16860931 - 16861133
Alignment:
| Q |
1 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| || || || || |||| | |||||||||||||| ||| |||||||||| ||||| ||||||||||| |
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| T |
16860931 |
tcactctcgttccatcacggataacgcattgactgctttcgagatcttgcaccatatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaa |
16861030 |
T |
|
| Q |
101 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctttccaagatggggtttaatgctaaatggatttcttggatgatga |
200 |
Q |
| |
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| ||||| || || || ||||||||||| || ||||| || ||| ||||||||||| ||| |||| ||| | || ||||||| |||||||||||| |
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| T |
16861031 |
cttgacatatccaaagcatttgacagtgtcagctggtcttatcttcaagctattcttgaaaagttgggtttttgttctcaatggataacttggatgatga |
16861130 |
T |
|
| Q |
201 |
tgt |
203 |
Q |
| |
|
||| |
|
|
| T |
16861131 |
tgt |
16861133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 2065 - 1909
Alignment:
| Q |
1 |
tcactctcgttctatcatggataacgctttaacagcatttgagactctccaccatatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaag |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| || || || || |||| | |||||||||||||| ||| |||||||||| ||||| ||||||||||| |
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| T |
2065 |
tcactctcgttccatcacggataacgcattgactgctttcgagatcttgcaccatatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaa |
1966 |
T |
|
| Q |
101 |
ttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctattctt |
157 |
Q |
| |
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| || || || || || ||||||||||| || ||||| || ||| ||| ||||||| |
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| T |
1965 |
cttgatatatccaaagcatttgacagtgtcagctggtcttatcttcaagttattctt |
1909 |
T |
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