View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_low_3 (Length: 443)
Name: NF19447_low_3
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 1737822 - 1738009
Alignment:
| Q |
11 |
gaaatcgaaaaaatatgagtatcttgcagtgagtagttggattttgaagtataatgacattagagttgtttgtatattaggttatctgttgatgaaaata |
110 |
Q |
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| T |
1737822 |
gaaatcgaaaaaatatgagtatcttgcagtgagtagttggattttgaagtataatgacattagagttgtttgtatattaggttatctgttgatgaaaata |
1737921 |
T |
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| Q |
111 |
ttttcttgactggttattttacttaagaaatttgcactagtgtttagcagggagtgagtagaactattaagttttgaaataacctaaa |
198 |
Q |
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| T |
1737922 |
ttttcttgactggttattttacttaagaaatttgcactagtgtttagcagggagttagtagaactattaagttttgaaataacctaaa |
1738009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 294 - 430
Target Start/End: Original strand, 1738009 - 1738152
Alignment:
| Q |
294 |
aatcaagccaaatgggtggaagatgtcaatgataca------ctactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaa |
387 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacacttacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaa |
1738108 |
T |
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| Q |
388 |
gctcctttta-ttatttttgtttagtttgacttacataaccaac |
430 |
Q |
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| T |
1738109 |
gctccttttatttatttttgtttagtttgacttacataaccaac |
1738152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 164 - 413
Target Start/End: Original strand, 1716485 - 1716735
Alignment:
| Q |
164 |
gtgagtagaactattaagttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgt |
262 |
Q |
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| T |
1716485 |
gtgagtagaactat-aagttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgt |
1716583 |
T |
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| Q |
263 |
attgaaatacagtcattttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacatacttccattcatgaaatt |
362 |
Q |
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| T |
1716584 |
attgaaatagagtcgttttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaatt |
1716683 |
T |
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| Q |
363 |
accaatgactcatttctaaaagaaagctcctttta-ttatttttgtttagtt |
413 |
Q |
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| T |
1716684 |
atcattgactcatttctgaaataaagctccttttatttatttttgtatagtt |
1716735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 1716393 - 1716453
Alignment:
| Q |
48 |
tggattttgaagtataatgacattagagttgtttgtatattaggttatctgttgatgaaaa |
108 |
Q |
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| T |
1716393 |
tggaatttaaagtataatgacattagagttgtttatatattagcttatctgttgatgaaaa |
1716453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
226 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
267 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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