View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19447_low_4 (Length: 426)
Name: NF19447_low_4
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_4 |
 | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 25801760 - 25801365
Alignment:
| Q |
15 |
atcagcgtagactagttttatacgacaatatgatgaatttttgttagattaggttataatactattttacatcatttgtgtatttccattaaattcaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25801760 |
atcagcgtagactagttttatacgacaatatgatgaatttttgttagattaggttataatactattttacatcatttgtgtatttccattaaattcaaat |
25801661 |
T |
|
| Q |
115 |
tgtaaactgaatcgtagtatttaaacaatgtgagacttgagttacttttagaaaattatggttgagttacctgcaaccaattaaaatcaatcatgtgtac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25801660 |
tgtaaactgaatcgtagtatttaaacaaggtgagacttgagttacttttagaaaattatggttgagttacctgcaaccaattaaaatcaatcatgtgtac |
25801561 |
T |
|
| Q |
215 |
tccactaactatatcaaacataggattctnnnnnnngtcaatgaaatgcacatgtttgattttaatcgattgttgagtaacttatccacaaatttttaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25801560 |
tccactaactatatcaaacataggattctaaaaaaagtcaatgaagtgcacatgtttgattttaatcgattgttgagtaacttatccacaaatttttaac |
25801461 |
T |
|
| Q |
315 |
gacaacttaaaatttaccttgaaacaaactttgcattatagaattctaattcattgcataatggcttatggttgaagagattggaaaggaattatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25801460 |
gacaacttaaaatttaccttgaaacaaactttgcattatagaattctaattcattgcataatggcttatggttgaagagattggaaaggaattatg |
25801365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 34833706 - 34833670
Alignment:
| Q |
188 |
caaccaattaaaatcaatcatgtgtactccactaact |
224 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
34833706 |
caactaattaaaatcaatcgtgtgtactccactaact |
34833670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 410
Target Start/End: Original strand, 112759 - 113153
Alignment:
| Q |
15 |
atcagcgtagactagttttatacgacaatatgatgaatttttgttagattaggttataatactattttacatcatttgtgtatttccattaaattcaaat |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
112759 |
atcagtgtagactagttttatacgacaatatgatgaattcttgttagattaggttataaaactagtttacatcatttgtgtatttc-attaaattcaaat |
112857 |
T |
|
| Q |
115 |
tgtaaactgaatcgtagtatttaaacaatgtgagacttgagttacttttagaaaattatggttgagttacctgcaaccaattaaaatcaatcatgtgtac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
112858 |
tgtaaactgaatcgtagtatttaaacaaagtgggacttgagttacttttagaaagttgtgggtgagttacctacaaccaattaaaatcaatcatgtgtac |
112957 |
T |
|
| Q |
215 |
tccactaactatatcaaacataggattctnnnnnnngtcaatgaaatgcacatgtttgattttaatcgattgttgagtaacttatccacaaatttttaac |
314 |
Q |
| |
|
||||||||| ||||||||||||||||||| || | || ||||||||||||| ||||||||||||||||||||||| |||||| | ||||| | |
|
|
| T |
112958 |
tccactaaccatatcaaacataggattctaaaaaaagttagtggaatgcacatgtttaattttaatcgattgttgagtaacctatccaaattttttttaa |
113057 |
T |
|
| Q |
315 |
gacaacttaaaatttaccttgaaacaaactttgcattatagaattctaattcattgcataatggcttatggttgaagagattggaaaggaattatg |
410 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113058 |
ggcaacttaaaatttaccttgaaacaaactttgcattatagaattctaattcattgcataatggcttatggttgaagagattggaaaggaattatg |
113153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 17957875 - 17957922
Alignment:
| Q |
189 |
aaccaattaaaatcaatcatgtgtactccactaactatatcaaacata |
236 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
17957875 |
aaccaattaaaatcaatcatgtgtacttcattaataatatcaaacata |
17957922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University