View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_low_6 (Length: 335)
Name: NF19447_low_6
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 15589725 - 15590050
Alignment:
| Q |
18 |
agaggagccttggttttcactatgtcattgatcagaaggaacctgttccattagaggatcacctgcatgattgtgattat-------------------a |
98 |
Q |
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| T |
15589725 |
agaggagccttggttttcactatgtcattgatcagaaggaacctgttccattagaggatcacctgcatgattgtgattatcagacgccattctttgtcta |
15589824 |
T |
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| Q |
99 |
atcagacgcatgtaccagactcttgtgnnnnnnngacaagtctaaaatgagtttataaatagtgacacctctcactttacacnnnnnnnn-attaaattt |
197 |
Q |
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| T |
15589825 |
atcagacgcatgtaccagactcttgtgtttttt-gacaagtctaaaatgagtttataaatagtgacacctctcactttacactttttttttattaaattt |
15589923 |
T |
|
| Q |
198 |
agggatcttcaagtttgttccatcatgtgaacgtgctctgattgtaggtccacgaaacttgatgcatggcccctctttcattttctgagccacaagaata |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
15589924 |
gggggtcttcaagtttgttccatcatgtgaacgtgctctgattgtaggtccacgaaatttgatgcctggcccctctttcattttctgagccacatgaatc |
15590023 |
T |
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| Q |
298 |
atgttgttttgactatgaattagatat |
324 |
Q |
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| T |
15590024 |
atgttgttttgactatgaattagatat |
15590050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 8292715 - 8292643
Alignment:
| Q |
218 |
catcatgtgaacgtgctctgattgtaggtccacgaaacttgatgcatggcccctctttcattttctgagccac |
290 |
Q |
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| T |
8292715 |
catcatgtgaacttgatctgatagcaggtccacaaaatttgttgtctgtcccctctttcgttttctgagccac |
8292643 |
T |
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