View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19447_low_7 (Length: 324)

Name: NF19447_low_7
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19447_low_7
NF19447_low_7
[»] chr4 (7 HSPs)
chr4 (18-276)||(50559352-50559606)
chr4 (267-324)||(32728503-32728559)
chr4 (276-324)||(19880100-19880147)
chr4 (274-322)||(28988620-28988667)
chr4 (277-324)||(48435487-48435533)
chr4 (277-324)||(55272284-55272330)
chr4 (274-324)||(960748-960797)
[»] chr2 (8 HSPs)
chr2 (277-324)||(16804114-16804160)
chr2 (277-324)||(16843396-16843442)
chr2 (274-324)||(41281879-41281928)
chr2 (274-324)||(18491851-18491900)
chr2 (274-324)||(34895646-34895695)
chr2 (277-324)||(43114703-43114749)
chr2 (274-324)||(12531568-12531617)
chr2 (283-324)||(14285822-14285862)
[»] chr7 (4 HSPs)
chr7 (274-324)||(31408538-31408587)
chr7 (274-324)||(33385017-33385066)
chr7 (276-324)||(40237065-40237112)
chr7 (274-323)||(31513434-31513482)
[»] chr3 (3 HSPs)
chr3 (282-321)||(52627889-52627928)
chr3 (277-324)||(54429173-54429219)
chr3 (276-321)||(25996417-25996461)
[»] chr1 (3 HSPs)
chr1 (272-324)||(44112823-44112874)
chr1 (274-324)||(35003440-35003489)
chr1 (274-324)||(38113100-38113149)
[»] chr6 (2 HSPs)
chr6 (277-324)||(33242549-33242595)
chr6 (275-324)||(27441688-27441736)
[»] chr5 (2 HSPs)
chr5 (277-324)||(30622627-30622673)
chr5 (283-323)||(17208221-17208260)
[»] chr8 (3 HSPs)
chr8 (275-324)||(34304934-34304981)
chr8 (281-321)||(16358745-16358784)
chr8 (276-324)||(35181662-35181709)
[»] scaffold0003 (1 HSPs)
scaffold0003 (275-324)||(45625-45673)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 50559352 - 50559606
Alignment:
Q  18 gcgataagaaaaggtattacgtggtactcaagctaagcaatataccgacttaaacgaacaaaagccgggaaaacgcgctgggagggatattgattttcaa 117  Q
    |||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50559352 gcgataagaaaatgtattacgtggcactcaagctaagcaatatgacgacttaaacgaacaaaagccgggaaaacgcgctgggagggatattgattttcaa 50559451  T
Q  118 tattgactctaatttatagagggggatagctaataattcaatcttaaatctaaaccaaatctttataaaattaaataatatcnnnnnnnctttactacaa 217  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  50559452 tattgactctaatttatagaggggga----taataattcaatcttaaatctaaaccaaatctttataaaattaaataatatctttttttctttactacaa 50559547  T
Q  218 aaagtaaataatatttatctatgccaaaactaaatctttataaaaggaaataatataaa 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50559548 aaagtaaataatatttatctatgccaaaactaaatctttataaaaggaaataatataaa 50559606  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 32728559 - 32728503
Alignment:
Q  267 ataatataaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  32728559 ataaaataaagagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 32728503  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 19880147 - 19880100
Alignment:
Q  276 agagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  19880147 agagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 19880100  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 28988667 - 28988620
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttac 322  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  28988667 aaagagtggtgatacatgtaca-ccctcatgtgacaatacaccccttac 28988620  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 48435487 - 48435533
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  48435487 gagtggtgatacatgtacacccc-catgtgacaatacatctcttacac 48435533  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 55272284 - 55272330
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||    
T  55272284 gagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 55272330  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 960748 - 960797
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||| ||||||||||||||||||||| ||| || |||||||||||||||||    
T  960748 aaagggtggtgatacatgtacacccc-catgtggcaatacacctcttacac 960797  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 16804160 - 16804114
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16804160 gagtggtgatacatgtacacccct-atatgacaatacacctcttacac 16804114  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 16843442 - 16843396
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16843442 gagtggtgatacatgtacacccct-atatgacaatacacctcttacac 16843396  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 41281879 - 41281928
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  41281879 aaagagtggtgatacatgtacacccc-catatggcaatacacctcttacac 41281928  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 18491900 - 18491851
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  18491900 aaagagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 18491851  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 34895646 - 34895695
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  34895646 aaagagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 34895695  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 43114749 - 43114703
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||    
T  43114749 gagtggtgatacatgtaca-ccctcatgtggcaatacacctcttacac 43114703  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 12531568 - 12531617
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||| ||||||||||||||| | |||||| |||||||||||||||||    
T  12531568 aaagagtgatgatacatgtacacctc-catatggcaatacacctcttacac 12531617  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 14285862 - 14285822
Alignment:
Q  283 tgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  14285862 tgatacatgtacacccct-atgtgacaatacacctcttacac 14285822  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 31408538 - 31408587
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  31408538 aaagagtggtgatacatgtacacccc-catgtgacaatacacctcttacac 31408587  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 33385066 - 33385017
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  33385066 aaagagtggtgatacatgtaaacccc-catgtgacaatacacctcttacac 33385017  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 40237112 - 40237065
Alignment:
Q  276 agagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  40237112 agagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 40237065  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 31513482 - 31513434
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttaca 323  Q
    |||||||||||||||||||||| |||| || || ||||||||||||||||    
T  31513482 aaagagtggtgatacatgtaca-cccttatgtggcaatacacctcttaca 31513434  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 52627889 - 52627928
Alignment:
Q  282 gtgatacatgtacacccctcatatgacaatacacctctta 321  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  52627889 gtgatacatgtacacccctcatatggcaatacacctctta 52627928  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 54429173 - 54429219
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||    
T  54429173 gagtggcgatacatgtacacccc-catatggcaatacacctcttacac 54429219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 25996461 - 25996417
Alignment:
Q  276 agagtggtgatacatgtacacccctcatatgacaatacacctctta 321  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  25996461 agagtagtgatacatgtacacccct-atatgacaatatacctctta 25996417  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 44112874 - 44112823
Alignment:
Q  272 ataaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||||| || |||| || |||||||||||||||||    
T  44112874 ataaagagtggtgatacatgtaca-ccttcatgtggcaatacacctcttacac 44112823  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 35003489 - 35003440
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||| ||||||| ||| || |||||||||||||||||    
T  35003489 aaagagtggtgatacatgcacacccc-catgtggcaatacacctcttacac 35003440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 38113100 - 38113149
Alignment:
Q  274 aaagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||| |||||||||| | ||| ||||||||||||||||||||    
T  38113100 aaagagtggtgattcatgtacacctc-catgtgacaatacacctcttacac 38113149  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 33242595 - 33242549
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||    
T  33242595 gagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 33242549  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 27441736 - 27441688
Alignment:
Q  275 aagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||    
T  27441736 aagagtggtgatacatgtacacacc-catgtggcaatacacctcttacac 27441688  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 30622627 - 30622673
Alignment:
Q  277 gagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||    
T  30622627 gagtggtgatacatgtacacccc-catgtggcaatacacctcttacac 30622673  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 17208260 - 17208221
Alignment:
Q  283 tgatacatgtacacccctcatatgacaatacacctcttaca 323  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  17208260 tgatacatgtacacccct-atgtgacaatacacctcttaca 17208221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 34304981 - 34304934
Alignment:
Q  275 aagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    ||||||||||||||||||||||||  ||| || |||||||||||||||||    
T  34304981 aagagtggtgatacatgtacaccc--catgtggcaatacacctcttacac 34304934  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 16358745 - 16358784
Alignment:
Q  281 ggtgatacatgtacacccctcatatgacaatacacctctta 321  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  16358745 ggtgatacatgtacacccc-catatggcaatacacctctta 16358784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 35181709 - 35181662
Alignment:
Q  276 agagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||| || |||| || |||||||||||||||||    
T  35181709 agagtggtgatacatgtaca-ccttcatgtggcaatacacctcttacac 35181662  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 45625 - 45673
Alignment:
Q  275 aagagtggtgatacatgtacacccctcatatgacaatacacctcttacac 324  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||    
T  45625 aagagtggtgatacatgtacacacc-catgtggcaatacacctcttacac 45673  T

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