View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19447_low_8 (Length: 273)
Name: NF19447_low_8
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_8 |
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| [»] chr5 (5 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 38743197 - 38743453
Alignment:
| Q |
17 |
cacacaaaataaattgaataatatacaaattaaaataaccaaagaaactaaaagactggagtttattattgccaataaacaatgcgaaatacattcaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743197 |
cacacaaaataaattgaataatatacaaattaaaataaccaaagaaactaaaagactggagtttattattgccaataaacaatgcgaaatacattcaaca |
38743296 |
T |
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| Q |
117 |
gggacagtgtctacaatttgtaaatacaatataactgatctatacataagctatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaa |
216 |
Q |
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| T |
38743297 |
gggacagtgtctacaatttgtaaatacaatataactgatctatacataagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaa |
38743396 |
T |
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| Q |
217 |
tctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38743397 |
tctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacactatagt |
38743453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 38782887 - 38782782
Alignment:
| Q |
168 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
267 |
Q |
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| T |
38782887 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
38782788 |
T |
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| Q |
268 |
tatagt |
273 |
Q |
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|||||| |
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| T |
38782787 |
tatagt |
38782782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 38789059 - 38788954
Alignment:
| Q |
168 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
267 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38789059 |
tatgcctcaaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
38788960 |
T |
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| Q |
268 |
tatagt |
273 |
Q |
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|||||| |
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| T |
38788959 |
tatagt |
38788954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 38789284 - 38789140
Alignment:
| Q |
14 |
gcacacacaaaataaattgaata-atatacaaattaaaataaccaaa-gaaactaaaa-gactggagtttattattgccaataaacaatgcgaaatacat |
110 |
Q |
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|||||||||||||||||| || | ||||||||||||||||||||||| |||||||||| || |||| |||||||||||||||||||||| |||||||||| |
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| T |
38789284 |
gcacacacaaaataaattaaaaatatatacaaattaaaataaccaaaagaaactaaaaagattggaatttattattgccaataaacaattcgaaatacat |
38789185 |
T |
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| Q |
111 |
tcaacagggacagtgtctacaatttgtaaatacaatataactgat |
155 |
Q |
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| T |
38789184 |
tcaacagggacaatgtctacaatttgtaaatacaatataactgat |
38789140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 38783100 - 38782958
Alignment:
| Q |
14 |
gcacacacaaaataaattgaataatatacaaattaaaataaccaaagaaactaaaagactggagtttattattgccaataaacaatgcgaaatacattca |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| | | | ||||||||||| |||| | ||||||||||| |
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| T |
38783100 |
gcacacacaaaataaattgaaaaatatacaaattaaaataaccaaagaaactgaaa-actgtaat---tcattgccaataaccaattcaaaatacattca |
38783005 |
T |
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| Q |
114 |
acagggacagtgtctacaatttgtaaatacaatataactgatctata |
160 |
Q |
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| || |||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
38783004 |
atagtgacagtgtctacaatttgtaaatacaatgtaattaatctata |
38782958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 30962765 - 30962869
Alignment:
| Q |
168 |
tatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatacacac |
267 |
Q |
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|||||||| |||||||| |||||||||| ||| | ||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
30962765 |
tatgcctccaagatccactctccccaaaacaacttttgatgaaccctaatttgatcac-agggtagtaaatagtttgatgggtgtagtcaaaatacacac |
30962863 |
T |
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| Q |
268 |
tatagt |
273 |
Q |
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|||||| |
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| T |
30962864 |
tatagt |
30962869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 30962554 - 30962691
Alignment:
| Q |
21 |
caaaataaattgaataa-tatacaaattaaaataaccaaagaaactaaaagactggagtttattattgccaataaacaatgcgaaatacattcaacaggg |
119 |
Q |
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|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||||||| || |
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| T |
30962554 |
caaaataaattgaaaaaatatacaaatcaaaataaccaaagaaactaaaagactggaat---ttattgccaataaccaaatcaaaatacattcaacaagg |
30962650 |
T |
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| Q |
120 |
acagtgtctacaatttgtaaatacaatataactgatctata |
160 |
Q |
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||| |||||||||||| | ||| || | ||| ||||||||| |
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| T |
30962651 |
acaatgtctacaatttatgaattcagtgtaattgatctata |
30962691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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