View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19447_low_9 (Length: 260)
Name: NF19447_low_9
Description: NF19447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19447_low_9 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 44137645 - 44137891
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137645 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacatcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcg |
44137744 |
T |
|
| Q |
101 |
ccaaggatgtcccctctctccttatctctacattttatctgtcgagggtctatcatcgatcataaaaaattatgagcttcgtggtaaactacatggttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137745 |
ccaaggatgtcccctctctccttatctctacattttatgtgccgagggtctatcatcgatcataaaaaattatgagcttcgtggtaaactacatggttct |
44137844 |
T |
|
| Q |
201 |
cgtgtgtgtcgaactgctcctcccattagccacctcctatttgctga |
247 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137845 |
cgtgtgtgtcaaactgctcctcccattagccacctcctatttgctga |
44137891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 20127515 - 20127636
Alignment:
| Q |
12 |
tggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcgccaaggatgtc |
111 |
Q |
| |
|
|||||||||||||| || ||||| || || ||||||||||||||||||||||| ||||| || ||||| |||||| |||| ||||| | |||||| || | |
|
|
| T |
20127515 |
tggatgatgatgtgcatcacctccgttgaataccacgtcatttttaatggtgaccgcattggccctatcactcccgaacgaggtcttcaccaaggctgcc |
20127614 |
T |
|
| Q |
112 |
ccctctctccttatctctacat |
133 |
Q |
| |
|
||||||| ||||| || ||||| |
|
|
| T |
20127615 |
ccctctcaccttacctatacat |
20127636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 27645557 - 27645436
Alignment:
| Q |
12 |
tggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcgccaaggatgtc |
111 |
Q |
| |
|
|||||||||||||| || || ||||| || || || || || |||||||| |||||||| || ||||| || || ||||||| || || ||||| || | |
|
|
| T |
27645557 |
tggatgatgatgtgcatcacttctgtggaatatcatgttatctttaatggcgatcgcattggacctatcacccctgaacgtggactccggcaaggctgcc |
27645458 |
T |
|
| Q |
112 |
ccctctctccttatctctacat |
133 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
27645457 |
ctctctcaccttatctctacat |
27645436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 7272891 - 7273141
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcg |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
7272891 |
aatggatttcatggaggatgatgtgtattacctctgttgagtaccatgttatctttaatggtgatcgcatcggtcctattactctccaacatggtctgcg |
7272990 |
T |
|
| Q |
101 |
ccaaggatgtcccctctctccttatctctacattttatctgtcgagggtctatcatcgatcataaaaaattatgagcttcgtggtaaactacatggttct |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7272991 |
ccaaggatgtcctctctctccttacctctacatcttatgtgtcgagggtctaccatccattataaaaaattatgagcttcgtggtaaactacacagttca |
7273090 |
T |
|
| Q |
201 |
cgtgtgtgtcgaactgctcctcccattagccacctcctatttgctgatgat |
251 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7273091 |
tgtgtgtgtcgcactgctcctcgcattagccacctcctatttgctgatgat |
7273141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29290775 - 29290835
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatgg |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||| || |||| ||||| |
|
|
| T |
29290775 |
aatggatttcttggatgatgatgtgtattacttcggtcgattaccacatccttttcaatgg |
29290835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35611474 - 35611534
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatgg |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||| || |||| ||||| |
|
|
| T |
35611474 |
aatggatttcttggatgatgatgtgtattacttcggtcgattaccacatccttttcaatgg |
35611534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9182943 - 9182877
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcg |
67 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||| || ||||| || ||||||||||||||||| |
|
|
| T |
9182943 |
aatggatcacttggatgatgatgtgtatttcaactgtagaataccatgttatttttaatggtgatcg |
9182877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4019332 - 4019272
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatgg |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||| || |||| ||||| |
|
|
| T |
4019332 |
aatggatttcttggatgatgatgtgtattacttcggtcgattaccacatccttttcaatgg |
4019272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24465163 - 24465223
Alignment:
| Q |
1 |
aatggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatgg |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||| || |||| ||||| |
|
|
| T |
24465163 |
aatggatttcttggatgatgatgtgtattacttcggtcgattaccacatccttttcaatgg |
24465223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 19931847 - 19931879
Alignment:
| Q |
48 |
gtcatttttaatggtgatcgcatcggtcctatt |
80 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
19931847 |
gtcatttttaatggtgatcgcattggtcctatt |
19931879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 238900 - 238770
Alignment:
| Q |
3 |
tggatttcttggatgatgatgtgtattacctctgtcgagtaccacgtcatttttaatggtgatcgcatcggtcctattactccccaacgtggtctgcgcc |
102 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| || || || ||| | ||||| || ||||| || || || || ||||| ||||||| || | | |
|
|
| T |
238900 |
tggatttcttcgatgatgatgtgcattacctctgttgaatatcatgtcctctttaacggagatcggattggcccaataactcctgaacgtggcctaagac |
238801 |
T |
|
| Q |
103 |
aaggatgtcccctctctccttatctctacat |
133 |
Q |
| |
|
|||| ||||| || || |||||||||||||| |
|
|
| T |
238800 |
aaggttgtcctctttcgccttatctctacat |
238770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University