View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19448_high_17 (Length: 308)
Name: NF19448_high_17
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 35 - 298
Target Start/End: Complemental strand, 35052871 - 35052608
Alignment:
| Q |
35 |
gtgatatgaaaaatactgttcagctacaaatgcttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaatt |
134 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052871 |
gtgatatgaaaaatactgctcagctacaaatgcttgtttttctcatttgaattaccatttttcttgaccaccatttcccttgtatgtttatattttaatt |
35052772 |
T |
|
| Q |
135 |
tttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaatcctgttttattaaatatgttgtaccatcaaaacacagcaaaatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35052771 |
tttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaatcctgttttattaaatatgttgtaccatcaaaacacaccaaaatg |
35052672 |
T |
|
| Q |
235 |
attcaaatgggttatctttttcaatttgatttttcttattctttgtcacaccttgctgcctttg |
298 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052671 |
attcaaataggttatctttttcaatttgatttttcttattctttgtcacaccttgctgcctttg |
35052608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 35068824 - 35068527
Alignment:
| Q |
1 |
gttgctgctattttcatcagacaannnnnnnncagtgatatgaaaaatactgttcagctacaaatgcttgtttttctcatttgaattaccatttttcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35068824 |
gttgctgctattttcatcagacaattttttttcagtgatatgaaaaatactgctcagctacaaatacttgtttttctcatttgaattaccatttttcttg |
35068725 |
T |
|
| Q |
101 |
accaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacaccgctatgagatagacttacctgtctaaatcctgttttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
35068724 |
accaccatttcccttgtatgtttatattttaatttttaagtgttactcttcaaatatacactgctaggagatagacttacctgtccaaatcctgttttat |
35068625 |
T |
|
| Q |
201 |
taaatatgttgtaccatcaaaacacagcaaaatgattcaaatgggttatctttttcaatttgatttttcttattctttgtcacaccttgctgcctttg |
298 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
35068624 |
taaatatgttgtaccatcaaaacacaccaaaatgattcaaatgggttatctttttcaatttgatttttcttattccttgtcacaacttgctgcctttg |
35068527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University