View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_high_28 (Length: 212)
Name: NF19448_high_28
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 700239 - 700433
Alignment:
| Q |
1 |
cagaaccactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttccacttaggtctccgcttgcgttaactg |
100 |
Q |
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| T |
700239 |
cagaaccactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttctacttaggtctccgcttgcgttaactg |
700338 |
T |
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| Q |
101 |
aggttatatatgtacttcctatgctgtctattttgatgaataaaggtactggggtggtgaccagcgtgcctagtgatgctttggatgattacatg |
195 |
Q |
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| T |
700339 |
aggttatatttgtacttcctatgctgtctattttgatgaataaaggtactggggtggtgaccagcgtgcctagtgatgctccggatgattacatg |
700433 |
T |
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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 23261878 - 23261709
Alignment:
| Q |
7 |
cactcaagagtacctcaggaacccacttgcttgcttgagctcacaggtcatgatttgatcggccttccacttaggtctccgcttgcgttaactgaggtta |
106 |
Q |
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| T |
23261878 |
cactctagggtacctcagaaaccgacttgtttgcttgagcttacgggtcaggatttgatcgggcttcctgtgaaatctcctctttccttgaatgagatta |
23261779 |
T |
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| Q |
107 |
tatatgtacttcctatgctgtctattttgatgaataaaggtactggggtggtgaccagcgtgcctagtga |
176 |
Q |
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| T |
23261778 |
tatatgtgcttcctatgttgtctattttgatggataaaggtaccggagtggtgaccagtgtgcctagtga |
23261709 |
T |
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