View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_high_5 (Length: 427)
Name: NF19448_high_5
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 229 - 391
Target Start/End: Original strand, 10503368 - 10503530
Alignment:
| Q |
229 |
tatggtaaatctcttactttgtctcttgttgtataattcttttggaattggaaccacaacagtatagtgtcctgttccatatgtttcacaaacataaggc |
328 |
Q |
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| T |
10503368 |
tatggtaaatctcttactttgtctcttattgtataattcttttggaattggaaccacaagagtatagtgtcctgttccatatgtttcacaaacataaggc |
10503467 |
T |
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| Q |
329 |
ttagtcatgttgttgaattccaaatttccactatcactaaacttaacacaaattggtgtatca |
391 |
Q |
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| T |
10503468 |
ttagtcatgttgttgaattccaaatttccactatcactaaacttaacacaaattggtgtatca |
10503530 |
T |
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Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 10503149 - 10503305
Alignment:
| Q |
10 |
acatcatcaatcattctcaagaacaggttgtgttctaatcgttggagccaaaggcaatttagtttcaccaatccaaaatgtatcaaaagactcgccattt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503149 |
acatcatcaatcattctcaagaacaggttgtgttctaatcgttggagccaaaggcaatttagtttcaccaatccaaaatgtatcaaaagactcgccattt |
10503248 |
T |
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| Q |
110 |
tctgaatttctctccaannnnnnnatcctcgtcttctttgcagccttaactaaagtt |
166 |
Q |
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| T |
10503249 |
tctgaatttctctccaatttttttatcctcgtcttctttgcagccttaactaaagtt |
10503305 |
T |
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