View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19448_high_7 (Length: 396)
Name: NF19448_high_7
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 50785036 - 50785413
Alignment:
| Q |
16 |
ccaccaaatgattgtgcagcattgatattgtttctctgatctccttccaaagaagctgccaagttaaaagcagctgcatgttgatccctttgtcctccaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785036 |
ccaccaaatgattgtgcagcattgatattatttctctgatctccttccaaagaagctgccaagttaaaagcagctgcatgttgatccctttgtcctccaa |
50785135 |
T |
|
| Q |
116 |
caacaccactcatgcttcttacaatctcatgaccaactcctaaaaagtcacgagtcagctgactactatcaccacctcctcttccaagccctacacccnn |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785136 |
caacaccactcatgcttctcacaatctcatgaccaactcctaaaaagtcacgagtcagctgactactatcaccacctcctcttccaagccctacaccc-- |
50785233 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnnnnnnactttgatcaaatattgaagtatttcctgtagcagcgaaagagttcatcaaatcctgcaaattactctgttcatgattccca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785234 |
-cctcctcctcctcctccactttgatcaaatattgaagtatttcctgtagcagcgaaagagttcatcaaatcctgcaaattactctgttcatgattccca |
50785332 |
T |
|
| Q |
316 |
ccaccaaaaccatagttcccacttccaccacccatttgcactctgctatgatcaccgccaccagaagaagttgagttactt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785333 |
ccaccaaaaccatagttcccacttccaccacccatttgcactctgctatgatcaccgccaccagaagaagttgagttactt |
50785413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University