View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_high_8 (Length: 394)
Name: NF19448_high_8
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 49532457 - 49532635
Alignment:
| Q |
19 |
gcctatactattgggttttgtacatcaattcagtgttgtttgtactcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtgg |
118 |
Q |
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| T |
49532457 |
gcctatactattgggttttgtacatca-ttcagtgttgtttgtactcactgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtgg |
49532555 |
T |
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| Q |
119 |
ctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
198 |
Q |
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| T |
49532556 |
ctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
49532635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 260 - 381
Target Start/End: Original strand, 49532697 - 49532818
Alignment:
| Q |
260 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
359 |
Q |
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| T |
49532697 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
49532796 |
T |
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| Q |
360 |
ccatccttgttcaaagttgata |
381 |
Q |
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| T |
49532797 |
ccatccttgttcaaagttgata |
49532818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 49478561 - 49478659
Alignment:
| Q |
62 |
actcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgta |
160 |
Q |
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| T |
49478561 |
actcaccgttgacacgatgtactcttcgaacgcttccttgtacttgtcatacaatggctgagaatagtcattaggaggcttttgagtacacatattgta |
49478659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 49703168 - 49703260
Alignment:
| Q |
89 |
aaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgcaattt |
181 |
Q |
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| T |
49703168 |
aaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcttttgagtacacataacgtaaatggtcctgcattacaattt |
49703260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 49486188 - 49486292
Alignment:
| Q |
77 |
gatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgc |
176 |
Q |
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| T |
49486188 |
gatgtactcttcaaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcctttgagtgcacatagtgtagatggtcctgtattgc |
49486287 |
T |
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| Q |
177 |
aattt |
181 |
Q |
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||||| |
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| T |
49486288 |
aattt |
49486292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 49522388 - 49522488
Alignment:
| Q |
292 |
gtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatactccatccttgttcaaagttgatattcttcgaca |
391 |
Q |
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||||| |||| |||| |||||||||||||| | |||| ||| |||||||| || | ||| |||| || |||||||| ||||||||||||| |||| |||| |
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| T |
49522388 |
gtgaactgagtctcatgaaagccttctagattattcttgagtttcttgataccttgctggataaaaccccatccttcttcaaagttgataatctttgaca |
49522487 |
T |
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| Q |
392 |
t |
392 |
Q |
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| |
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| T |
49522488 |
t |
49522488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 49486668 - 49486708
Alignment:
| Q |
286 |
tcagaggtgaaatgaggctcaggaaagccttctagaatgtt |
326 |
Q |
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| T |
49486668 |
tcagaggtgaattgaggctccggcaagccttctagaatgtt |
49486708 |
T |
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