View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_high_9 (Length: 392)
Name: NF19448_high_9
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 6454119 - 6453739
Alignment:
| Q |
10 |
catcatcattcatcagaatcagaatgggttcagagaaagaagatccacagaaactgaagcgattagcggcggattcatacgactatgattccgattcacg |
109 |
Q |
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| T |
6454119 |
catcatcattcatcagaatcagaatgggttcagagaaagaagatccacagaaactgaagcgattagcggcggattcatacgactatgattccgattcacg |
6454020 |
T |
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| Q |
110 |
atggcctgattattggaacaacgttctcatccctcctcacatgtcttctcgtcaagatgttgtttctcacttcaaacgcaaattctatcaacgctatctt |
209 |
Q |
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| T |
6454019 |
atggcctgattattggaacaacgttctcatccctcctcacatgtcttctcgtcaagatgttgtttctcacttcaaacgcaaattctatcaacgctatctt |
6453920 |
T |
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| Q |
210 |
gtatgtctcaaatgacccttttctttattttcattaattttgaatcaagttatgatttttattggttttagccaattgggtcatcgtagatagtggtttt |
309 |
Q |
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| T |
6453919 |
gtatgtctcaaatgacccttttctttattttcattaattttgaatcaagttatgatttttattggttttagccaattgggtcatcgtagatagtggtttt |
6453820 |
T |
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| Q |
310 |
tagttttaggggttttgcactgtcagtgttaaatagttttacactgtcatccaatgaacatccagaagtcctagctcaact |
390 |
Q |
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| T |
6453819 |
tagttttaggggttttgcactgtcagtgttaaatagttttacactgtcatccaatgaacatccagaagtcctaactcaact |
6453739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 6453487 - 6453407
Alignment:
| Q |
275 |
ttttagccaattgggtcatcgtagatagtggtttttagttttaggggttttgcactgtcagtgttaaatagttttacactg |
355 |
Q |
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| T |
6453487 |
ttttagccaattggatcatcgtagatagtggtttttagttttaggggttttgtactgtcagtgtaaaacagttttacactg |
6453407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 371
Target Start/End: Complemental strand, 6453402 - 6453248
Alignment:
| Q |
216 |
ctcaaatgacccttttctttattttcattaattttgaatcaagttatgatttttattggttttagccaattgggtcatcgtagatagtggtttttagttt |
315 |
Q |
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| T |
6453402 |
ctcaaatgacacttttctttcttttcatcattttcgattgaagtttccatttttgttctttttagtcaattgggtcatagtagatagcacttttaaattt |
6453303 |
T |
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| Q |
316 |
taggggttttgcactgtcagtgttaaatagttttacactgtcatccaatgaacatc |
371 |
Q |
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| T |
6453302 |
attgggttt-gcagtgtcagtgtaaaatagttttacactaacatgcaatgaacatc |
6453248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 13073610 - 13073648
Alignment:
| Q |
325 |
tgcactgtcagtgttaaatagttttacactgtcatccaa |
363 |
Q |
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| T |
13073610 |
tgcactgacagtgtaaaatagttttacactgtcatccaa |
13073648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 19629990 - 19630031
Alignment:
| Q |
330 |
tgtcagtgttaaatagttttacactgtcatccaatgaacatc |
371 |
Q |
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| T |
19629990 |
tgtcagtgtaaaatagttttacactgccatccaataaacatc |
19630031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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