View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_13 (Length: 365)
Name: NF19448_low_13
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 4094858 - 4094614
Alignment:
| Q |
20 |
ctaccggatgaaatcttagccaaatatagtcaaaaaatgtgagagggagagatagttgggttgaagaagaactaggagaaactttgcattgttcatggat |
119 |
Q |
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| T |
4094858 |
ctaccggatgaaatcttagccaaatatagtcaaaaaatgtgagagggagagatagttgggttgaagaagaactaggagaaactttgcattgttcatggat |
4094759 |
T |
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| Q |
120 |
tttgatgtgtttgtttagagaagccatttggaaaatgatgatgatgcttggtctaagaaaaa------tttgcttgtgttata----tcctagttctgtt |
209 |
Q |
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| T |
4094758 |
tttgatgtgtttgtttagagaagccatttggaaaatgatgatgatgattggtctaataaaaatgtgcttgtgcttgtgttatatacttactagttctgtt |
4094659 |
T |
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| Q |
210 |
ttattatcatcttttgaacgttgtggaaatataatatcaccctcgttc |
257 |
Q |
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| T |
4094658 |
ttatt---atcttttgaacgttgttgaaatataatataaccctcgttc |
4094614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 4102320 - 4102246
Alignment:
| Q |
115 |
tggattttgatgtgtttgtttagagaagccatttggaaaatgatgatgatgcttggtctaagaaaaatttgcttgtgttat |
195 |
Q |
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| T |
4102320 |
tggattttgatgtagttgtttggagaagtcatttggaa------gatgatgtttggtctaagaaacatttgcttgtgttat |
4102246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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