View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_15 (Length: 333)
Name: NF19448_low_15
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 48669926 - 48669622
Alignment:
| Q |
3 |
attttaatttcaagtaagaataaaatcaaactgaatactaattcttccttggctttgtatgtctagataaaaaactctaagctactacaaaacacccatg |
102 |
Q |
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| T |
48669926 |
attttaatttcaagtaagaataaaatcaaactgaatactaattcttccttggctttgtatgtctagataaaaaactctaagctactacaaaacacccatg |
48669827 |
T |
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| Q |
103 |
tgtattctttcctacaatatattatatgtattaagcatccacatgaccacacgtgactaatctttgtcaaagaatttgttgaatacataaggtaggttct |
202 |
Q |
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| T |
48669826 |
tgtattctttcctacaatatattatatgtattaagcatccacatgaccacacgtgactaatctttgtcaaagaatttgttgaatacataaggtaggttct |
48669727 |
T |
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| Q |
203 |
ttctccaactatatttttctctttctcctgacacaacaagagttagagatgaaacttgtgatcacttgtttaaggtatctgagtagataacactcggatc |
302 |
Q |
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| T |
48669726 |
ttctccaactatatttt------tctcctgac---acaagagttagagatgaaactcgtgatcacttgtttaaggtatctgagtagataacacttggatc |
48669636 |
T |
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| Q |
303 |
aaccacgcgttgat |
316 |
Q |
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|||||||||||||| |
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| T |
48669635 |
aaccacgcgttgat |
48669622 |
T |
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