View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19448_low_17 (Length: 315)

Name: NF19448_low_17
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19448_low_17
NF19448_low_17
[»] chr1 (1 HSPs)
chr1 (3-298)||(36823426-36823721)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 36823721 - 36823426
Alignment:
Q  3 tttacttttaacatgagggtgataaacttatatagcaatcaaatttcttaagaggcacaacaaagtaggctatcagagnnnnnnnggaatacagtagtac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  36823721 tttacttttaacatgagggtgataaacttatatagcaatcaaatttcttaagaggcacaacaaagtaggctatcagagaaaaaaaggaatacagtagtac 36823622  T
Q  103 ccaattcctcactacacctaacctaacattagtctgcaaactagtaaacagtaaacactaacaaaaccaaaacccaccacgccacaatgcacgcgcctca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36823621 ccaattcctcactacacctaacctaacattagtctgcaaactagtaaacagtaaacactaacaaaaccaaaacccaccacgccacaatgcacgcgcctca 36823522  T
Q  203 gacacatgggaagcaatagcaataaaaccaaaagtccacagaaattgctccatcacccaatgaccccacatccaattgcaacccagcaacaaacat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36823521 gacacatgggaagcaatagcaataaaaccaaaagtccacagaaattgctccatcacccaatgaccccacatccaattgcaacccagcaacaaacat 36823426  T

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