View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_21 (Length: 289)
Name: NF19448_low_21
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 43017787 - 43017516
Alignment:
| Q |
1 |
ttctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaaggcta |
100 |
Q |
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| T |
43017787 |
ttctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaaggcta |
43017688 |
T |
|
| Q |
101 |
tccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017687 |
tccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactcttt |
43017588 |
T |
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| Q |
201 |
caaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattg |
272 |
Q |
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| T |
43017587 |
caaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattg |
43017516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 35057657 - 35057433
Alignment:
| Q |
8 |
tggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaaa |
106 |
Q |
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| T |
35057657 |
tggaattatagcacaaagttctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaaa |
35057558 |
T |
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| Q |
107 |
aataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaag |
206 |
Q |
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| T |
35057557 |
aatgaagtt-----------------tcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaag |
35057475 |
T |
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| Q |
207 |
ctgaatttttcataaaatattagaataagtcttgccctatat |
248 |
Q |
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| T |
35057474 |
ctgaatttttcataaaatattagaatatgtcttgccctatat |
35057433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 38569809 - 38569757
Alignment:
| Q |
58 |
tttagagttattttatttcaaaagttaat-aaaaatcaaggctatccaaaaat |
109 |
Q |
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| T |
38569809 |
tttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaat |
38569757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 14328897 - 14328987
Alignment:
| Q |
128 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
218 |
Q |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14328897 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14328987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 14421907 - 14421997
Alignment:
| Q |
128 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
218 |
Q |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14421907 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14421997 |
T |
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