View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19448_low_22 (Length: 277)

Name: NF19448_low_22
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19448_low_22
NF19448_low_22
[»] chr5 (16 HSPs)
chr5 (1-258)||(1849385-1849642)
chr5 (1-258)||(1164124-1164381)
chr5 (1-63)||(3299109-3299171)
chr5 (1-63)||(3392002-3392064)
chr5 (11-68)||(38987306-38987363)
chr5 (11-68)||(39726028-39726085)
chr5 (98-258)||(3298893-3299059)
chr5 (98-172)||(3391878-3391952)
chr5 (11-62)||(39399520-39399571)
chr5 (11-62)||(40596251-40596302)
chr5 (11-68)||(40417896-40417953)
chr5 (12-68)||(39168516-39168572)
chr5 (152-258)||(39879226-39879332)
chr5 (11-68)||(39879430-39879487)
chr5 (211-258)||(40411931-40411978)
chr5 (206-258)||(38987104-38987156)
[»] chr4 (1 HSPs)
chr4 (11-62)||(25912715-25912766)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1849642 - 1849385
Alignment:
Q  1 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaaccagggcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849642 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaaccagggcagg 1849543  T
Q  101 aagtatgcccgatataagattgacaacttccgcagcatcagatatgcttttgaaacagaaaaacaaaccttcgtcgatgttgtatttgattcttcgaata 200  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||     
T  1849542 aagtatgcccgttataagattgacaactttcgcagcatcagatatgctattgaaacagaaagacaaaccttcatcgatgttgtatttgattctccgaatc 1849443  T
Q  201 tttcgaaggataccaagatggttcgaaacgctgacctgctccaaatgaaagaaagtac 258  Q
    |||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  1849442 ttttcaaggataccgagatggttcgaaacgctgacctgctccaaatgaaacaaagtac 1849385  T

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Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1164124 - 1164381
Alignment:
Q  1 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaaccagggcagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1164124 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcagg 1164223  T
Q  101 aagtatgcccgatataagattgacaacttccgcagcatcagatatgcttttgaaacagaaaaacaaaccttcgtcgatgttgtatttgattcttcgaata 200  Q
    ||||||| ||  |||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||| | ||||||||||| |||||| |||| |    
T  1164224 aagtatgtccactataagattgacaacttccgcagcatcagataagctattgaaatagaaagacaaaccttcattgatgttgtattcgattctccgaaaa 1164323  T
Q  201 tttcgaaggataccaagatggttcgaaacgctgacctgctccaaatgaaagaaagtac 258  Q
    |||| || |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  1164324 tttccaacgataccaagatggttccaaacgctgacctgctccaaatgaaacaaagtac 1164381  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3299171 - 3299109
Alignment:
Q  1 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaa 63  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3299171 caatatgactaggcagaataatcaaatccccgcaacaaattgggacgatttcaacagaaaaaa 3299109  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3392064 - 3392002
Alignment:
Q  1 caatattactaggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaa 63  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3392064 caatatgactaggcagaataatcaaatccccgcaacaaattgggacgatttcaacagaaaaaa 3392002  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 38987363 - 38987306
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat 68  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  38987363 aggcagaaagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtat 38987306  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 39726085 - 39726028
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat 68  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  39726085 aggcagaaagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtat 39726028  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 3299059 - 3298893
Alignment:
Q  98 aggaagtatgcccgatataagattgacaacttccgcagcatcagatatgcttttgaaacagaaaaacaaacct------tcgtcgatgttgtatttgatt 191  Q
    |||||||||| ||  ||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||      || ||||| |||| |||||||    
T  3299059 aggaagtatgtccactataagattgacaacatccgtagcatcagataagctattgaaacagaaagacaaaccttcatcgtcatcgattttgtttttgatt 3298960  T
Q  192 cttcgaatatttcgaaggataccaagatggttcgaaacgctgacctgctccaaatgaaagaaagtac 258  Q
    ||   |||||  | ||| |||  ||||| | || ||||||||| ||||||||||||||| |||||||    
T  3298959 ctcataatatgactaagcatagtaagattggtccaaacgctgatctgctccaaatgaaacaaagtac 3298893  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 3391952 - 3391878
Alignment:
Q  98 aggaagtatgcccgatataagattgacaacttccgcagcatcagatatgcttttgaaacagaaaaacaaaccttc 172  Q
    |||||||||| ||  ||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||||    
T  3391952 aggaagtatgtccactataagattgacaacatccgtagcatcagataagctattgaaacagaaagacaaaccttc 3391878  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 39399571 - 39399520
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaa 62  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  39399571 aggcagaaaaatcaaatccccgcagcaaatggggacgatttcaacaaaaaaa 39399520  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 40596302 - 40596251
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaa 62  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  40596302 aggcagaaaaatcaaatccccgtagcaaatggggacgatttcaacagaaaaa 40596251  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 40417953 - 40417896
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat 68  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||  ||||||||||    
T  40417953 aggcagaaagatcaaatccccgcagcaaatggggacgatttcaacacgaaaaaggtat 40417896  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 39168572 - 39168516
Alignment:
Q  12 ggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat 68  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||| ||||| |||||    
T  39168572 ggcagaaaaatcaaatctccgcagaaaattgggacgatttcaacaaaaaaatggtat 39168516  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 39879332 - 39879226
Alignment:
Q  152 gaaacagaaaaacaaaccttcgtcgatgttgtatttgattcttcgaatatttcgaaggataccaagatggttcgaaacgctgacctgctccaaatgaaag 251  Q
    |||||||||| | |||||||| || |||| ||||||||||||   |   || |||| | |||||| || |||| ||||||||| ||||||||||||||||    
T  39879332 gaaacagaaagaaaaaccttcatcaatgtcgtatttgattctcttagctttacgaacggtaccaaaattgttcaaaacgctgatctgctccaaatgaaag 39879233  T
Q  252 aaagtac 258  Q
    |||||||    
T  39879232 aaagtac 39879226  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 39879487 - 39879430
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat 68  Q
    ||||||||  |||||||||||||||||||| |||||||||| ||||  ||||||||||    
T  39879487 aggcagaaagatcaaatccccgcagcaaatggggacgattttaacacgaaaaaggtat 39879430  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 40411978 - 40411931
Alignment:
Q  211 taccaagatggttcgaaacgctgacctgctccaaatgaaagaaagtac 258  Q
    |||||| || |||| ||||||||| |||||||||||||||||||||||    
T  40411978 taccaaaattgttcaaaacgctgatctgctccaaatgaaagaaagtac 40411931  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 38987156 - 38987104
Alignment:
Q  206 aaggataccaagatggttcgaaacgctgacctgctccaaatgaaagaaagtac 258  Q
    |||||||||||||| | ||  |||||||| ||||||||||||||||| |||||    
T  38987156 aaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtac 38987104  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 25912715 - 25912766
Alignment:
Q  11 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaa 62  Q
    |||||||| ||||||||||| |||| |||| ||||||||||||||| |||||    
T  25912715 aggcagaaaaatcaaatcccagcagaaaatggggacgatttcaacaaaaaaa 25912766  T

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