View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_24 (Length: 252)
Name: NF19448_low_24
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 12513616 - 12513749
Alignment:
| Q |
119 |
gattaatcatgaataagacggtagagattgataacatgtcaaagaccaactctcccgaaagcgtaagttatttgatcaaggattgttaaaagagcaaact |
218 |
Q |
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| T |
12513616 |
gattaatcatgaataagacggtagagattgataacatgtcaaagaccaactctcccgaaagcgtaagttatttgatcaaggattgttaaaagagcaaact |
12513715 |
T |
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| Q |
219 |
acaactagaaccaactcaacctaattttaatgac |
252 |
Q |
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| T |
12513716 |
acaactagaaccaactcaacctaattttaatgac |
12513749 |
T |
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Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 12484830 - 12485050
Alignment:
| Q |
21 |
tttattatctaacaaatcctc-tcacacaaacactttgggcttgaagcatggaggataagcaaaccaactcaaacttgtgcacttgtgtttcaaactcag |
119 |
Q |
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| T |
12484830 |
tttattacctaacaaacccccctcacacaaacattttgggctagaagcatggaggatatgcaaacccactcaaactggtg--------tttcaaactcaa |
12484921 |
T |
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| Q |
120 |
attaatcatgaataagacggtagagattgataacatgtcaaagaccaactctcccgaaagcgtaagttatttgatcaaggattgttaaaagagcaaacta |
219 |
Q |
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| T |
12484922 |
atttattatgcataccacggcagagattgataccatgtcaaagaccaactctccagaaagcttaagttatttgatccaggattgttaaaagaacaaacta |
12485021 |
T |
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| Q |
220 |
caactagaaccaactcaacctaattttaa |
248 |
Q |
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| T |
12485022 |
caactagaaccaactcaacctaattttaa |
12485050 |
T |
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