View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_28 (Length: 238)
Name: NF19448_low_28
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 39279665 - 39279481
Alignment:
| Q |
37 |
tgctcctagaagtttataagcaggtattggctaagagagaccatgaaatatttgtaatattatatagttaacatgaaatgtattctctatcgtggcacat |
136 |
Q |
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| T |
39279665 |
tgctcctagaagtttataagaaggcattggctaagacagaccatgaaatatttgtaatattatatagttaacatgaaatgtattctctatcgtggcacat |
39279566 |
T |
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| Q |
137 |
acctgatctttaagacgctctctctcaataaccagttgttttactaactctttaaaaagttttgcccgcattcctatgtcctttg |
221 |
Q |
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| T |
39279565 |
acctgatctttaagacgctctctctcaataaccagttgttttactaactctttaaaaagttttgcccgcattcctatgtcctttg |
39279481 |
T |
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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 31464928 - 31464992
Alignment:
| Q |
98 |
atatagttaacatgaaatgtattctctatcgtggcacatacctgatctttaagacgctctctctc |
162 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
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| T |
31464928 |
atatggttaacatgaaatgtattctctatcttggcacattcctgatctttaagatgctctctctc |
31464992 |
T |
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