View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19448_low_3 (Length: 519)
Name: NF19448_low_3
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_3 |
 | |
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| [»] scaffold0018 (2 HSPs) |
| | |
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| [»] scaffold0099 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 140581 - 140088
Alignment:
| Q |
19 |
ataaactgttttgaaaacttcattcgaatcatcattatttgtatttatctccattgccttattatagccagcaatgttcttggaaaaaccaagtgatgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
140581 |
ataaactgttttgaaaacttcattcgaatcatcattatttgtatttatctccattgccttattatagccagcaatgttcttggaaaaaccaagtgatgga |
140482 |
T |
|
| Q |
119 |
gaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcggagatttcttcaagtcttaactttc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
140481 |
gaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcggagatttcttcaagtcttaactttc |
140382 |
T |
|
| Q |
219 |
cttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcaaatgcttgaaatgcaaagatacttgggttaatgttatcttcttcagggtattc |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
140381 |
cttgtgatgatttttttgcagtttcaacaatagctttagttgcatcatatgcttgaaatgcaaagatacttgggttaatgctatcttcttcagggtattc |
140282 |
T |
|
| Q |
319 |
tagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaacaccttgcatgttgaag |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
140281 |
tagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaacaccttgcatgttgaag |
140182 |
T |
|
| Q |
419 |
ataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatcaaacctatttcctttgctt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
140181 |
ataacagaagagttaactgaatcaagaaggccagcaacttcattcgggataatccacgccgaacctttttccatcaaacctatttcttttgctt |
140088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 94 - 512
Target Start/End: Complemental strand, 149115 - 148697
Alignment:
| Q |
94 |
gttcttggaaaaaccaagtgatggagaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcg |
193 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
149115 |
gttcttagaaaaaccgagtgtctgagaccaaaatgccatttctctgtagcttttccctatcacattaattatgttgaaggttggtgacaaaatcgtttcg |
149016 |
T |
|
| Q |
194 |
gagatttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcaaatgcttgaaatgcaaagatacttgggt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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|
| T |
149015 |
gagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaatagctttagctgcatcatatgcttgaagtgcaaagatacttgggt |
148916 |
T |
|
| Q |
294 |
taatgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
148915 |
taatgttatcttcttcagggtattctagtgcaaactttctttggaatttcaatttcaattttctaaaggtctcattcatttccatgaagcgtgttttaaa |
148816 |
T |
|
| Q |
394 |
tccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgccgaacctttttccatc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
148815 |
tccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaacttcatttgggataatccacgccgaacctttttccatc |
148716 |
T |
|
| Q |
494 |
aaacctatttcctttgctt |
512 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
148715 |
aaacctatttgttttgctt |
148697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 179 - 512
Target Start/End: Complemental strand, 24897746 - 24897413
Alignment:
| Q |
179 |
gacaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcaaatgcttgaaatg |
278 |
Q |
| |
|
||||||||| |||| |||| || ||||||||| ||||||||||||||| | |||| |||| |||||||||||| ||||| | ||||||||| || |
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|
| T |
24897746 |
gacaaaatcttttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagctgcataatatgcttgaagtg |
24897647 |
T |
|
| Q |
279 |
caaagatacttgggttaatgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccat |
378 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || | || ||||||||| || |
|
|
| T |
24897646 |
caaagttacttgggttaacgctatcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaagccttattcatttctat |
24897547 |
T |
|
| Q |
379 |
aaagtgtgttttaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgcc |
478 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| || |
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|
| T |
24897546 |
gaagtgtgttctaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcatccgggataatccacacc |
24897447 |
T |
|
| Q |
479 |
gaacctttttccatcaaacctatttcctttgctt |
512 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
24897446 |
gaacctttttccatcaaacctatttgttttgctt |
24897413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 179 - 512
Target Start/End: Complemental strand, 24987352 - 24987019
Alignment:
| Q |
179 |
gacaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcaaatgcttgaaatg |
278 |
Q |
| |
|
||||||||| |||| |||| || ||||||||| |||||| |||||||| | |||| |||| |||||||||||||||||| | ||||||||| || |
|
|
| T |
24987352 |
gacaaaatcttttctgagaattgttcaagtctgaactttacttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagtg |
24987253 |
T |
|
| Q |
279 |
caaagatacttgggttaatgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttccat |
378 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || | || ||||||||| || |
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|
| T |
24987252 |
caaagttacttgggttaacgctatcttcttcagggtattctagtgcaaactttctttggaataggaatttaaactttctgaaagccttattcatttctat |
24987153 |
T |
|
| Q |
379 |
aaagtgtgttttaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgcc |
478 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||||||| || |
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|
| T |
24987152 |
gaagtgtgttctaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccacacc |
24987053 |
T |
|
| Q |
479 |
gaacctttttccatcaaacctatttcctttgctt |
512 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
24987052 |
gaacctttttccatcaaacctatttgttttgctt |
24987019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 178 - 512
Target Start/End: Complemental strand, 24909850 - 24909516
Alignment:
| Q |
178 |
tgacaaaatcgtttcggagatttcttcaagtcttaactttccttgtgatgannnnnnngcagtttcaacaatagctttagttgcatcaaatgcttgaaat |
277 |
Q |
| |
|
|||||||||| |||| |||| || ||||||||| ||||||||||||||| | |||| |||| |||||||||||||||||| | ||||||||| | |
|
|
| T |
24909850 |
tgacaaaatcttttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcagcaatagctttagttgcataatatgcttgaagt |
24909751 |
T |
|
| Q |
278 |
gcaaagatacttgggttaatgttatcttcttcagggtattctagtgcaaactttctttggaatttgaatttaaattttctaaaggtctcattcatttcca |
377 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| || || ||||||||| | |
|
|
| T |
24909750 |
gcaatgttacttgggttaacactatcttcttcagggtattctagtgcaaactttcttcggaataggaatttaaactttctgaaacccttattcatttcta |
24909651 |
T |
|
| Q |
378 |
taaagtgtgttttaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagaaggccagcaactccattcgggataatccacgc |
477 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||| | |
|
|
| T |
24909650 |
tgaagtgtgttctaaatccaacaacaccttgcatgttgaagataacagaagagttaactgaatcaagtaggccagcaacctcgtccgggataatccatac |
24909551 |
T |
|
| Q |
478 |
cgaacctttttccatcaaacctatttcctttgctt |
512 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
24909550 |
cgaacctttttccatcaaacctatttgttttgctt |
24909516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 24897893 - 24897805
Alignment:
| Q |
92 |
atgttcttggaaaaaccaagtgatggagaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtga |
180 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24897893 |
atgttctttgaaaaaccaagtgttgaagaccaaagtgccaattctctataacttttcccaatcacattaattatgttgaaggttggtga |
24897805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 24909996 - 24909908
Alignment:
| Q |
92 |
atgttcttggaaaaaccaagtgatggagaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtga |
180 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24909996 |
atgttctttgaaaaaccaagtgttgaagaccaaagtgccaattctctataacttttcccaatcacattaattatgttgaaggttggtga |
24909908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 24987499 - 24987411
Alignment:
| Q |
92 |
atgttcttggaaaaaccaagtgatggagaccaaaatgccatttctctataacttttccctatcacattaattatgttgaaggttggtga |
180 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24987499 |
atgttctttgaaaaaccaagtgttgaagaccaaaatcccaattctctataacttttcccaatcacattaattatgttgaaggttggtga |
24987411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 249 - 499
Target Start/End: Complemental strand, 23421 - 23159
Alignment:
| Q |
249 |
tagctttagtt-gcatcaaatgcttgaaatgcaaagatacttgggttaatgttatcttcttcagggta-ttctagtgcaaacttt-ctttgg-aatttga |
344 |
Q |
| |
|
||||||||||| |||| | ||||||||| ||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |||||| ||| || |
|
|
| T |
23421 |
tagctttagtttgcataatatgcttgaagtgcaaagttacttgggttaacgctatcttcttcagggtagttctagtgcaaacttttctttggtaatagga |
23322 |
T |
|
| Q |
345 |
atttaaattttct--aaaggtctcattcatttcc-ataaagtg-tgttttaaatccaacaacacctt-gcatgttgaagataacagaagagtt-aactga |
438 |
Q |
| |
|
|||| || |||| |||| | ||||||||| || ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23321 |
attttaaacttcttgaaagcctttattcatttcttatgaagtggtgttctaaatccaacaacaccttagcatgttgaagataacagaagagttaaactga |
23222 |
T |
|
| Q |
439 |
atc-aagaaggccagcaactccattcgggataatccacgccgaacc-tttttccatcaaacct |
499 |
Q |
| |
|
||| ||| ||||||||||| | | ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23221 |
atcaaagtaggccagcaacctcgtccgggataatccacaccgaaccttttttccatcaaacct |
23159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 23611 - 23563
Alignment:
| Q |
133 |
ttctctataacttttccctatcacatt-aattatgttgaaggttggtga |
180 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23611 |
ttctctataacttttcccaatcacatttaattatgttgaaggttggtga |
23563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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