View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19448_low_7 (Length: 405)
Name: NF19448_low_7
Description: NF19448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19448_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 2264138 - 2263774
Alignment:
| Q |
20 |
atgaagactcgtcttcttcatttttgcaccaatcgttatttcaagggacttgatttcatacatatgaagacagtcaaatcaagtcgtagaaaaatattat |
119 |
Q |
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| T |
2264138 |
atgaagactcgtcttcttcattttggcaccaatcgttatttcaagggacttgatttcgtacatatgaagacagtcaaatcaagtcgtagaaaaatattat |
2264039 |
T |
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| Q |
120 |
caatatataaaattgattttatacagnnnnnnncttcaaattggacgaaataagtatttggtgtctataaatattttaaattttgcttttagtctttctn |
219 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
2264038 |
caatatataaaatttattttatacattttttttcttcaaattggactaaataagtatttggtctctataaatattttaaattttgcttttagtcttttt- |
2263940 |
T |
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| Q |
220 |
nnnnnnttcttccatttgcggtcctcttaatattttccaataccacttataactgtgctcacgtggattccttcaaaatttgaatttttatcttgcaatc |
319 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2263939 |
--caaattcttccatttgcggtcctcctaatatttttcaataccacttataactgtgctcacgtggattcattcaaaatttgaatttttatcttgcaatc |
2263842 |
T |
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| Q |
320 |
atg-nnnnnnnngtcaagtaatctagtaacttgaagttcacctcttattgtgaatagttagggtgtca |
386 |
Q |
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||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2263841 |
atgtttttttttgtcaagtagtctagtaacttaaagttcacctcttattgtgaataattagggtgtca |
2263774 |
T |
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