View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19449_high_18 (Length: 317)
Name: NF19449_high_18
Description: NF19449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19449_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 38568833 - 38569124
Alignment:
| Q |
1 |
atcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568833 |
atcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgata |
38568932 |
T |
|
| Q |
101 |
tgcaggtgttcggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568933 |
tgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttat |
38569032 |
T |
|
| Q |
201 |
gttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcgtttgaccgaggagcactgtgatgat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
38569033 |
gttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgat |
38569124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 38527615 - 38527695
Alignment:
| Q |
196 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcgtttgaccga |
276 |
Q |
| |
|
|||||| |||||||| |||||| || |||| || ||||||| ||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccga |
38527695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University