View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19449_high_2 (Length: 473)
Name: NF19449_high_2
Description: NF19449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19449_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 212 - 473
Target Start/End: Complemental strand, 41705399 - 41705139
Alignment:
| Q |
212 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtgtgttagaggt |
311 |
Q |
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| T |
41705399 |
tttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtgtgttagaggt |
41705300 |
T |
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| Q |
312 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gtatttgnnnnnn |
409 |
Q |
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| T |
41705299 |
aatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggtatttg-ttttt |
41705201 |
T |
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| Q |
410 |
nngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtg |
473 |
Q |
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| T |
41705200 |
ttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtg |
41705139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41705611 - 41705459
Alignment:
| Q |
1 |
tgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcac |
100 |
Q |
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| T |
41705611 |
tgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcac |
41705512 |
T |
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| Q |
101 |
ttcctgtgtccatgtagagagttatgggttgggagt-gggtccgaggttgaag |
152 |
Q |
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| T |
41705511 |
ttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaag |
41705459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
51 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
131 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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