View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19449_high_3 (Length: 453)
Name: NF19449_high_3
Description: NF19449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19449_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 422
Target Start/End: Original strand, 15075837 - 15076237
Alignment:
| Q |
22 |
catcatcatggggagttcatagggtgctctcaaaattcaggacaatgcctgaatcagagaagaacaagaaaatgataaaccaagagacattcatgtagca |
121 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||| || ||||| |||||||||||| ||| |
|
|
| T |
15075837 |
catcaccatgaggagttcatagggtgctctcaaaattcaggactatgcatgaatcgaagaagaccaagaaaattatgaaccaggagacattcatggtgca |
15075936 |
T |
|
| Q |
122 |
aagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagtttacaatcatcatgtttcaatgtcttaatgctgaagaa |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15075937 |
aagggttttgaaggtaaaggagaaagtgaaaaaactaaggaagggcaacagggaaaatgagattacaatcatcatgtttcaatgtattaatgctgaagaa |
15076036 |
T |
|
| Q |
222 |
attgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaagtggata |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15076037 |
attgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaactgatagaagattggaaaaagtggata |
15076136 |
T |
|
| Q |
322 |
ataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctatggttgtt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076137 |
ataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaatgacaccaccaccaacaatttatagattaaatattctatggttgtt |
15076236 |
T |
|
| Q |
422 |
t |
422 |
Q |
| |
|
| |
|
|
| T |
15076237 |
t |
15076237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 15073040 - 15073441
Alignment:
| Q |
22 |
catcatcatggggagttcatagggtgctctcaaaattcaggacaatgcctgaatcagagaagaacaagaaaatgataaaccaagagacattcatgtagca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
15073040 |
catcatcatggggagttcatagggtgctctcaaaattcaggactatgcctgaattagagaagaacaagaaaatgatgaaccaagagacattcatgaggca |
15073139 |
T |
|
| Q |
122 |
aagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagtttacaatcatcatgtttcaatgtcttaa----tgctga |
217 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||| | ||||| |||||||||||||||||||| |||||| |
|
|
| T |
15073140 |
acgggttttgaaggctaaggagaaagtggaaaaactaaggaagggaaacagggagcaagagatgacaatgatcatgtttcaatgtcttaattaatgctga |
15073239 |
T |
|
| Q |
218 |
agaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaagtg |
317 |
Q |
| |
|
| ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
15073240 |
aaaaattatgcacgatgatacgtcaatgattgatttgaatgttcttgcttggttgattgatcaaaatttgaaggatattcatagaagattggaagaagtg |
15073339 |
T |
|
| Q |
318 |
gataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctatggt |
417 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15073340 |
gataataatggtcatccaagtcaagtcatgactactcaaagttaagttcaacttcaaatgacgccaccaccaacaatttatagattaaatattctatggt |
15073439 |
T |
|
| Q |
418 |
tg |
419 |
Q |
| |
|
|| |
|
|
| T |
15073440 |
tg |
15073441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 354
Target Start/End: Original strand, 13308514 - 13308670
Alignment:
| Q |
195 |
atgtttcaatgtcttaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
294 |
Q |
| |
|
||||||||||| || ||||| | |||||||| |||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
13308514 |
atgtttcaatgcctgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
13308613 |
T |
|
| Q |
295 |
ccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactc |
354 |
Q |
| |
|
| ||||| |||||| |||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
13308614 |
ttggaagaaggttggaagcagtggacaataatggtca---aaatcaaatcatgactactc |
13308670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 13308405 - 13308473
Alignment:
| Q |
86 |
caagaaaatgataaaccaagagacattcatgtagcaaagggttttgaaggctaaggagaaagtgaaaaa |
154 |
Q |
| |
|
|||||||||||| || |||||||| |||||| | |||||||| |||||||||| ||| | |||||||| |
|
|
| T |
13308405 |
caagaaaatgatgaatcaagagactttcatgaaccaaagggtgatgaaggctaaagagcaggtgaaaaa |
13308473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 19004615 - 19004532
Alignment:
| Q |
51 |
tcaaaattcaggacaatgcctgaatcagagaagaacaagaaaatgataaaccaagagacattcatgtagcaaagggttttgaag |
134 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||| ||||||||||| || |||||||| |||| | | ||||||||||||||| |
|
|
| T |
19004615 |
tcaaaattcaggactatgactaaattggagaagaaaaagaaaatgatgaatcaagagactttcaagaaacaaagggttttgaag |
19004532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 18950264 - 18950208
Alignment:
| Q |
78 |
gagaagaacaagaaaatgataaaccaagagacattcatgtagcaaagggttttgaag |
134 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||| | | ||||||||||||||| |
|
|
| T |
18950264 |
gagaagaaaaagaaaatgatgaatcaagagactttcaagaaacaaagggttttgaag |
18950208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 11096173 - 11096217
Alignment:
| Q |
248 |
tgatttgaatgatcttgcttggttgattgaccaaaatttgaagga |
292 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
11096173 |
tgatttgagtgatctttcttggttgattgaccataatttgaagga |
11096217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
259 |
atcttgcttggttgattgaccaaaatttgaagga |
292 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University