View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19449_high_6 (Length: 360)
Name: NF19449_high_6
Description: NF19449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19449_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 43184261 - 43184424
Alignment:
| Q |
34 |
atatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaattgtagatgatcacactcatcatggtttatgttacga |
133 |
Q |
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| T |
43184261 |
atatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaactgtagatgatcacactcatcatggtttatgttacga |
43184360 |
T |
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| Q |
134 |
aatccaaagatgaaaacatacaaagaactgggggacataaaaactgaccactgacactaacatg |
197 |
Q |
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| T |
43184361 |
aatccaaagatgaaagcatacaaagaactgggggacataaaacctgaccattgacaccaacatg |
43184424 |
T |
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Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 43184461 - 43184560
Alignment:
| Q |
236 |
ccaacctaaattgcaataattaatagcttaattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
335 |
Q |
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| T |
43184461 |
ccaacctaaattgcaataattaatagcttgattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
43184560 |
T |
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