View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19449_low_1 (Length: 216)
Name: NF19449_low_1
Description: NF19449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19449_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 36420167 - 36419975
Alignment:
| Q |
15 |
agttttcagcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaata |
114 |
Q |
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| T |
36420167 |
agttttcagcgagcgctgatggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcgtacattgaata |
36420068 |
T |
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| Q |
115 |
aaaatgctggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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| T |
36420067 |
aaaatgctggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcattttctt |
36419975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 36377086 - 36376901
Alignment:
| Q |
22 |
agcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgc |
121 |
Q |
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||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| ||||||||||| | |||||||||||||||| |
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| T |
36377086 |
agcgagcactgatggtagtttctgttaattcatttattgaagatcctcctcctgatgttgatgattcttgcaaatcttggttgccattgaataaaaatgc |
36376987 |
T |
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| Q |
122 |
tggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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| T |
36376986 |
tggtttttgaggtgggcagagaggtgtttcattgcatagcatgaaaacaacttctaacattgatggtctattaattgcattttctt |
36376901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 36430117 - 36429928
Alignment:
| Q |
18 |
tttcagcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaa |
117 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||| || ||||||| |||| |
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| T |
36430117 |
tttcagcgagcactgatggtagtttctgttagttcatttattgaaggcccttctcctgaagttggcgactcttgcaaatcttggtttccattgaagaaaa |
36430018 |
T |
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| Q |
118 |
atgctggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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| T |
36430017 |
atgctggttttagaggtgggcaaagaggtgtttcattggctagcatgaaaacaacttctaacattgatggtctattcatggcattttctt |
36429928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 36390329 - 36390146
Alignment:
| Q |
24 |
cgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgctg |
123 |
Q |
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||||| |||| |||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||| |||| | || ||| |||||||||||||||||| |
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| T |
36390329 |
cgagcactgatggtagtttctgttacttcgtttactgaagatcctcctcctgatgttgatgactcttgcaagtatttgctgccattgaataaaaatgctg |
36390230 |
T |
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| Q |
124 |
gtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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| T |
36390229 |
gtttttggggtgggcaaagaggtatttcattggctagcatgaaaacaacatctaacattgatggtctattaattgcattttctt |
36390146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 36436590 - 36436411
Alignment:
| Q |
22 |
agcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgc |
121 |
Q |
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||||||| |||| |||||||||||||| ||||||||||||||||||| || ||||| | ||| |||| || ||| | |||||||||||||||| |
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| T |
36436590 |
agcgagcactgatggtagtttctgttaattcatttattgaagatcct------gatgttgatggttcttgcaattcatggttgccattgaataaaaatgc |
36436497 |
T |
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| Q |
122 |
tggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
36436496 |
tggttttagaggtgggagaagaggtgtttcattgcatagcatgaaaacaacatctaacattgatggtctattaattgcattttctt |
36436411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 36400520 - 36400335
Alignment:
| Q |
22 |
agcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgc |
121 |
Q |
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|||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||| | | |||||||||||||| |
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| T |
36400520 |
agcgagcgatgatggtagtttcagttacttcatttattgaagatcctcctcctgacgttgatgactcttgcaaatctttgtcgtcgttgaataaaaatgc |
36400421 |
T |
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| Q |
122 |
tggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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|||||||||||||| ||||||||| || |||||| |||||| ||||| || ||||||||||| |||||||| || |||| ||||| |
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| T |
36400420 |
tggtttttgaggtgcgcaaagaggcgtgtcattggctagcataaaaaccacttctaacattgatggtctattcatcgcattttctt |
36400335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 36407973 - 36407795
Alignment:
| Q |
22 |
agcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgc |
121 |
Q |
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||||||| |||| ||||||||||||| ||||||||||||||||||| || ||||| | ||| |||| || ||| | |||||||||||| ||| |
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| T |
36407973 |
agcgagcactgatagtagtttctgttacttcatttattgaagatcct------gatgttgatggttcttgcaattcatggttgccattgaataaaa-tgc |
36407881 |
T |
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| Q |
122 |
tggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
36407880 |
tggtttttgaggtgggcagagaggtgtttcattgcatagcatgaaaacaatttctaacattgatggtctattaattgcattttctt |
36407795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 36413096 - 36412918
Alignment:
| Q |
22 |
agcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaaatgc |
121 |
Q |
| |
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||||||| |||| ||||||||||||| ||||||||||||||||||| || ||||| | ||| |||| || ||| | |||||||||||| ||| |
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| T |
36413096 |
agcgagcactgatagtagtttctgttacttcatttattgaagatcct------gatgttgatggttcttgcaattcatggttgccattgaataaaa-tgc |
36413004 |
T |
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| Q |
122 |
tggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
36413003 |
tggtttttgaggtgggcagagaggtgtttcattgcatagcatgaaaacaatttctaacattgatggtctattaattgcattttctt |
36412918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 36371327 - 36371138
Alignment:
| Q |
18 |
tttcagcgagcgctgacggtagtttctgttagttcatttattgaagatcctcctcctgaagttgacgactctggcaaatcttggcttacattgaataaaa |
117 |
Q |
| |
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||||||||||| || | ||||| || |||| ||||||||||||||||||| ||||||||||| | ||||| | || || | ||| |||||||||||| |
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| T |
36371327 |
tttcagcgagcactaatagtagtctcggttaattcatttattgaagatccttctcctgaagttaatgactcatgtaagtcatcgctgccattgaataaaa |
36371228 |
T |
|
| Q |
118 |
atgctggtttttgaggtgggcaaagaggtgtttcattgcatagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||| ||||| |
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| T |
36371227 |
atgctggtttttttggttcgcgaagaggtgtttcattggctagcatgaaaacaacttctaacactgacggtctaataattgcattttctt |
36371138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 36401670 - 36401621
Alignment:
| Q |
158 |
tagcatgaaaacaacatctaacattgacggtctattaattgcatattctt |
207 |
Q |
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||||||||||||||| || |||||||| |||||||||||||||| ||||| |
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| T |
36401670 |
tagcatgaaaacaacttccaacattgatggtctattaattgcattttctt |
36401621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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