View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_high_13 (Length: 455)

Name: NF1944_high_13
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_high_13
NF1944_high_13
[»] chr4 (4 HSPs)
chr4 (1-439)||(37853395-37853836)
chr4 (132-241)||(53786753-53786863)
chr4 (130-235)||(19189537-19189643)
chr4 (154-195)||(17692995-17693036)
[»] chr2 (2 HSPs)
chr2 (129-233)||(797658-797762)
chr2 (129-231)||(35717055-35717158)
[»] chr6 (3 HSPs)
chr6 (129-189)||(16190164-16190224)
chr6 (145-198)||(17990346-17990399)
chr6 (13-61)||(16189934-16189982)
[»] chr8 (3 HSPs)
chr8 (158-207)||(16623268-16623317)
chr8 (13-111)||(16623004-16623105)
chr8 (13-61)||(26029550-26029596)
[»] chr5 (2 HSPs)
chr5 (13-56)||(39700658-39700701)
chr5 (154-191)||(29020287-29020324)
[»] chr3 (1 HSPs)
chr3 (13-111)||(44864565-44864664)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-57)||(86383-86423)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 37853395 - 37853836
Alignment:
Q  1 tacgaagtaaagatagaaaaatacacaaaattaaagggacggtcatatttaataattataa---actttgttgtttccaatataaataagttataaatgt 97  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  37853395 tacgaagtaaagatagaaaaatacacaaaattaaagggacagtcatatttaataattataatcaactttgttgtttccaatataaataagttataaatgt 37853494  T
Q  98 aataaaaatgacatagtattcaaaattctagcacatcaatattatactgttcatcccttgattcaaactcttgttcttccacctccaactcctcatctcc 197  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  37853495 aataaaaatgacatagtattaaaaattctagcacatcaatattatactgttcatcccttgattcaaactcttgtgcttccacctccaactcctcatctac 37853594  T
Q  198 actagacacagctgtagctagtctagattgctatagcggtatagtggatagtgggattgtcgcaatttgcagccgcgacaaccgtcactgctgaaggcag 297  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37853595 actagacacagctgtagctagtctagattgctacagcggtatagtggatagtgggattgtcgcaatttgcagccgcgacaaccgtccctgctgaaggcag 37853694  T
Q  298 cgaacggggagattgcgacgcgccaaacctacgctgttcctctaaagtgccgctatagtgcgctactgacaacatagttgaaagcaatatataaaagcta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853695 cgaacggggagattgcgacgcgccaaacctacgctgttcctctaaagtgccgctatagtgcgctactgacaacatagttgaaagcaatatataaaagcta 37853794  T
Q  398 aaatataatgtcaacgatcaattttaaaattcatactgaatt 439  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37853795 aaatataatgtcaacgatcaattttaaaattcatactgaatt 37853836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 53786863 - 53786753
Alignment:
Q  132 atcaatattatactgttcatcccttgattca-aactcttgttcttccacctccaactcctcatctccactagacacagctgtagctagtctagattgcta 230  Q
    |||||||||||  |||| ||| ||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||| || |||| ||||||||||||||    
T  53786863 atcaatattatcttgtttatcacttgattcataactcttgttcttccacatccaactcctcatttccattaggcacaactttagcgagtctagattgcta 53786764  T
Q  231 tagcggtatag 241  Q
    |||||| ||||    
T  53786763 tagcgggatag 53786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 19189643 - 19189537
Alignment:
Q  130 acatcaatattatactgttcatcccttg-attcaaactcttgttcttccacctccaactcctcatctccactagacacagctgtagctagtctagattgc 228  Q
    |||||||||||||  |||||||| |||| |||||||||  |||||||||| ||||||||||||||||||| | | |||||||||||  | ||||||||||    
T  19189643 acatcaatattatcttgttcatcacttggattcaaacttctgttcttccatctccaactcctcatctccatttggcacagctgtagtgactctagattgc 19189544  T
Q  229 tatagcg 235  Q
    |||||||    
T  19189543 tatagcg 19189537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 17692995 - 17693036
Alignment:
Q  154 cttgattcaaactcttgttcttccacctccaactcctcatct 195  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  17692995 cttgattcaaactcttgtttttccatctccaactcctcatct 17693036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 797658 - 797762
Alignment:
Q  129 cacatcaatattatactgttcatcccttgattcaaactcttgttcttccacctccaactcctcatctccactagacacagctgtagctagtctagattgc 228  Q
    ||||||||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||  ||| || | ||||||  ||||||||||||    
T  797658 cacatcaatatcatcttgttcatcacttgattcaaactattgttcttccacctccaactcctcatctcctttagtcataactgtagtgagtctagattgc 797757  T
Q  229 tatag 233  Q
    |||||    
T  797758 tatag 797762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 35717055 - 35717158
Alignment:
Q  129 cacatcaatattatactgttcatcccttgattcaaactctt-gttcttccacctccaactcctcatctccactagacacagctgtagctagtctagattg 227  Q
    ||||||||||||||  |||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||| ||| || ||||||||  |||||||| ||    
T  35717055 cacatcaatattatcttgttcatcacttgattcaaaatctttgttcttccacctccaactcatcatctccattaggcatagctgtagtgagtctagactg 35717154  T
Q  228 ctat 231  Q
    ||||    
T  35717155 ctat 35717158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 16190164 - 16190224
Alignment:
Q  129 cacatcaatattatactgttcatcccttgattcaaactcttgttcttccacctccaactcc 189  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  16190164 cacatcaatattatcttgttcatcccttgattcaaactcttgttcttcaacctccaactcc 16190224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 17990399 - 17990346
Alignment:
Q  145 tgttcatcccttgattcaaactcttgttcttccacctccaactcctcatctcca 198  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||    
T  17990399 tgttcatcacttgattcaaactattgttcttccacttccaactcctcatctcca 17990346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 16189934 - 16189982
Alignment:
Q  13 atagaaaaatacacaaaattaaagggacggtcatatttaataattataa 61  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||| |||||    
T  16189934 atagaaaaatacacaaaattaaaggaacaatcatacttaataactataa 16189982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 16623268 - 16623317
Alignment:
Q  158 attcaaactcttgttcttccacctccaactcctcatctccactagacaca 207  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  16623268 attcaaactcttgttcttccacctccaactcctcaactccattagccaca 16623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 16623004 - 16623105
Alignment:
Q  13 atagaaaaatacacaaaattaaagggacggtcatatttaataattata---aactttgttgtttccaatataaataagttataaatgtaataaaaatgac 109  Q
    |||||||||||||||||||||||| || | ||||| ||||||| ||||   ||||||||  ||||  ||  |||| |||| |||||||||| ||||||||    
T  16623004 atagaaaaatacacaaaattaaagagatgatcatacttaataactataatcaactttgtcatttcacatcaaaattagttctaaatgtaatcaaaatgac 16623103  T
Q  110 at 111  Q
    ||    
T  16623104 at 16623105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 26029596 - 26029550
Alignment:
Q  13 atagaaaaatacacaaaattaaagggacggtcatatttaataattataa 61  Q
    ||||||||||||||||  |||||||||| |||||| |||||||||||||    
T  26029596 atagaaaaatacacaa--ttaaagggacagtcatacttaataattataa 26029550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 39700658 - 39700701
Alignment:
Q  13 atagaaaaatacacaaaattaaagggacggtcatatttaataat 56  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  39700658 atagaaaaatacacaaaattaaaaggacagtcatatttaataat 39700701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 29020287 - 29020324
Alignment:
Q  154 cttgattcaaactcttgttcttccacctccaactcctc 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29020287 cttgattcaaactcttgatcttccacctccaactcctc 29020324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 44864565 - 44864664
Alignment:
Q  13 atagaaaaatacacaaaattaaagggacggtcatatttaa-taattataaactttgttgtttccaatataaataagttataaatgtaataaaaatgacat 111  Q
    ||||||| |||||||||||||||||||| |||||| |||| | || || ||||||||   |||| |   ||||||||| |||||||||| ||||||||||    
T  44864565 atagaaatatacacaaaattaaagggacagtcatacttaatttataattaactttgtcaattcccaccaaaataagttctaaatgtaatcaaaatgacat 44864664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 86423 - 86383
Alignment:
Q  17 aaaaatacacaaaattaaagggacggtcatatttaataatt 57  Q
    |||||||||||||||||||| ||| |||||| |||||||||    
T  86423 aaaaatacacaaaattaaagagactgtcatacttaataatt 86383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University