View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_18 (Length: 412)
Name: NF1944_high_18
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 117 - 354
Target Start/End: Original strand, 19306883 - 19307125
Alignment:
| Q |
117 |
atattgcgcgtaattgaacttggaatggccatccc-aacccctagggtttatgaagcgacccaatgcaaaaaagaatggtttaataataagtatgaatca |
215 |
Q |
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| T |
19306883 |
atattgcgcgtaattgaacttggaatggtcatccccaacccctagggtttacgaagcgacccaatgcaaaaaagaatggtttaataataagtatgaatca |
19306982 |
T |
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| Q |
216 |
nnnnnnnn----gaaggaagtatgaatcattttgaaaagcaacttaggtttacatttaataccactttactttataaatttataaataaactggaattat |
311 |
Q |
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| T |
19306983 |
ttttttttttttgaaggaagtatgaatcattttgaaaagcaacttaggtttacatttaataccactttacattataaatttataaataaactggaattat |
19307082 |
T |
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| Q |
312 |
ttaactgatgtgaagaagagaggggaataaacgatacaatgac |
354 |
Q |
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| T |
19307083 |
ttaactgatgtgaagaagagaggggaataaacgatacaatgac |
19307125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 38399325 - 38399377
Alignment:
| Q |
238 |
tcattttgaaaagcaacttaggtttacatttaataccactttactttataaat |
290 |
Q |
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| T |
38399325 |
tcattttgaaaaaccattttggtttacattcaataccactttactttgtaaat |
38399377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 38401867 - 38401919
Alignment:
| Q |
238 |
tcattttgaaaagcaacttaggtttacatttaataccactttactttataaat |
290 |
Q |
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| T |
38401867 |
tcattttgaaaaaccattttggtttacattcaataccactttactttgtaaat |
38401919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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