View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_20 (Length: 380)
Name: NF1944_high_20
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 47 - 375
Target Start/End: Complemental strand, 45169667 - 45169335
Alignment:
| Q |
47 |
ctacaatctattatatatctccaattaacaaacttttgcttatattaaaaacaaagtnnnnnnngacaagccatggggtgaattattgtgtacaaataa- |
145 |
Q |
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| T |
45169667 |
ctacaatctattatatatctctaattaacaaccttttgcttatattaaaaacaaagtaaaaaaagacaagccatggggtgaattattgtgtacaaataaa |
45169568 |
T |
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| Q |
146 |
----cctttcacggatcaatttgtttagcttacagaagaacttaataatgaattttgccagtgtagcgtattaacagtaagaattcataatatgcatttg |
241 |
Q |
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| T |
45169567 |
ataacctttcacggatcaatttgtttagcttacagaagaacttaataatgaattttgccagtgtagcgtattaacagtaagaattcataatat-catttg |
45169469 |
T |
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| Q |
242 |
cacacggattgaaaaagacatattgacagtcaactgggataagccatggcattcatgcatggaccatggcttatgttttcttcttccacaaactttgaat |
341 |
Q |
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| T |
45169468 |
cacacggattgaaaaagacatattgacagtcaactgggataagccatggcattcatgcatggaccatggcttatgttttcttcttccacaaactttgaat |
45169369 |
T |
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| Q |
342 |
tatacaactgcatggttggagctttcatctcact |
375 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45169368 |
tatacaactgcatggttggagctttcatctcact |
45169335 |
T |
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