View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1944_high_22 (Length: 337)
Name: NF1944_high_22
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 23302525 - 23302652
Alignment:
| Q |
193 |
ccagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccaca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23302525 |
ccagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccaca |
23302624 |
T |
|
| Q |
293 |
aaacatgctttttgtatatggcacatta |
320 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23302625 |
aaacatgctttttgtatatggcacatta |
23302652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 23302344 - 23302430
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
23302344 |
aatattgtttggttgtgcgctcattcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
23302430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 16149535 - 16149409
Alignment:
| Q |
194 |
cagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccacaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16149535 |
cagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccacaa |
16149436 |
T |
|
| Q |
294 |
aacatgctttttgtatatggcacatta |
320 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16149435 |
aacatgctttttgtatatggcacatta |
16149409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 16149715 - 16149629
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
16149715 |
aatattgtttggttgtgcgctcattcgaaatgaaacggtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc |
16149629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 4652144 - 4652016
Alignment:
| Q |
193 |
ccagacttttgttactctcatgaagaagcctccaaa-gccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccgtccac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4652144 |
ccagacttttgttactctcatgaagaagcctccaaaagccaatcattactgatcaagatccatggatgactcaagctattgcttttgaaatgccatccac |
4652045 |
T |
|
| Q |
292 |
aaaacatgctttttgtatatggcacatta |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4652044 |
aaaacatgctttttgtatatggcacatta |
4652016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 4652324 - 4652238
Alignment:
| Q |
13 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4652324 |
aatattgtttggttgtgcgctcattcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatctctctc |
4652238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University