View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_32 (Length: 263)
Name: NF1944_high_32
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_32 |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 24754096 - 24753869
Alignment:
| Q |
16 |
gtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
115 |
Q |
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| T |
24754096 |
gtaatcacacgagaaatgagggtgatgttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
24753997 |
T |
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| Q |
116 |
aaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttcca |
215 |
Q |
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| T |
24753996 |
aaggtggtagtccaccttcactggccttttttatacgaaatggacttggtcaaattttcgacatagctcaagattgttttaaccgaggtt---ctttcca |
24753900 |
T |
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| Q |
216 |
agcctccaattctgcatccggtcatgttgct |
246 |
Q |
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| T |
24753899 |
agcctccaattctgcatccggtcatgttgct |
24753869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 23680330 - 23680424
Alignment:
| Q |
150 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttg |
244 |
Q |
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| T |
23680330 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttg |
23680424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 24052567 - 24052661
Alignment:
| Q |
150 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttg |
244 |
Q |
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| T |
24052567 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttg |
24052661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 6153 - 5925
Alignment:
| Q |
16 |
gtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaagggaatgg |
115 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
6153 |
gtaatcccacgagaattgagggtgaggttaactcctccccttgtattctcacctgaattgagggagactttttctcgttattggttcgagaagggaatgg |
6054 |
T |
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| Q |
116 |
aaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttcca |
215 |
Q |
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||||||||||||||||||| || ||| ||| || |||||||||| |||||| |||||| |||||||||||||||||||||| | ||||||| |
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| T |
6053 |
taggtggtagtccaccttcaaaggtcgtctttatagattatggacttggtcatattttcagcatagctcaagattgttttaaccgaggttatgctttcca |
5954 |
T |
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| Q |
216 |
agcctccaattctgcatccggtcatgttg |
244 |
Q |
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| T |
5953 |
agcctccaattctgcatccggtcatgttg |
5925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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