View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1944_high_33 (Length: 263)
Name: NF1944_high_33
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 33787467 - 33787712
Alignment:
| Q |
14 |
atatataacttataaaaatgaattaaaacctgttctactaagctaggcattacagattaactctacatataaactggacgcgttttaaactgatacaata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33787467 |
atatataacttataaaaatgaattaaaacctgttctactaagctaggcattacagat-aactctacatataaactggacgcgttttaaactgatacaata |
33787565 |
T |
|
| Q |
114 |
tggtttaacagtccacatagat----tgatttggaacgttaaaaatcatcatttgtagtcaaaacgcgtcttccacaattaatcttctttctgtcaccaa |
209 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
33787566 |
tggtttaaccgtccacatagatcgattgatttggaacgttaaaaatcatcatttgtagtcaaaacgcatcttccacaattaatcttctttttgtcaccaa |
33787665 |
T |
|
| Q |
210 |
caatttcatgcaagcaccgtcctttttaaaacttcaaagaattatct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33787666 |
caatttcatgcaagcaccgtcctttttaaaacgtcaaagaattatct |
33787712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University