View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_high_4 (Length: 606)

Name: NF1944_high_4
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_high_4
NF1944_high_4
[»] chr2 (3 HSPs)
chr2 (265-598)||(10773714-10774049)
chr2 (37-233)||(10774050-10774245)
chr2 (493-541)||(15508909-15508957)
[»] chr8 (1 HSPs)
chr8 (493-529)||(13407328-13407364)
[»] chr4 (2 HSPs)
chr4 (499-535)||(38537512-38537548)
chr4 (495-539)||(39016805-39016849)
[»] chr3 (1 HSPs)
chr3 (493-529)||(27243052-27243088)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 265 - 598
Target Start/End: Complemental strand, 10774049 - 10773714
Alignment:
Q  265 agcagtttgggtagcttaatcatatattttgatagaaagctgctggaaattaaagagatcaatagtgatacgaagtgattaagaagacat--gatttgat 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  10774049 agcagtttgggtagcttaatcatatattttgatagaaagctgctggaaattaaagagatcaatagtgatacgaagtgattaagaagacatatgatttgat 10773950  T
Q  363 catgcaattcggtcaattgtgtaaatgtctttcatagtagagcggattttgtaaacacatttggtcattcattcgagttataaattataacttgagttta 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| | ||||||    
T  10773949 catgcaattcggtcaattgtgtaaatgtctttcatagtagagcggattttgtaaatacatttcgtcatttattcgagttataaattataacctaagttta 10773850  T
Q  463 gaaattgtttaatttcatctaatnnnnnnntgagtgttagagagattgttcaaaagaaagtgttgctgacatttctcaaagaaatttgtgatgacctagt 562  Q
    ||||||||||||||||||| |||       | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  10773849 gaaattgtttaatttcatccaataaaaaaataagtgttggagagattgttcaaaagaaagtgttgctgatatttctcaaagaaatttgtgatgacctaat 10773750  T
Q  563 gatcagataacactctatacttgtacaccctatgct 598  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10773749 gatcaaataacactctatacttgtacaccctatgct 10773714  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 10774245 - 10774050
Alignment:
Q  37 ttagtgtcggttggtttatggagacaaagcaagaaaaacatttcagtggctactagcagttaaaagattgagtcaatgtgaaatcagagcagatctgtgg 136  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10774245 ttagtgtcggttggtttatgaagacaaagcaagaaaaacatttcagtggctactagcagttaaaagattgagtcaatgtgaaatcagagcagatctgtgg 10774146  T
Q  137 attttgttgcaatgctttctctgcaatgtttttggctttcttttctgtgtttcagtgtattannnnnnnggcattgtatgtgtgtgtggtttttgac 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||    
T  10774145 attttgttgcaatgctttctctgcaatgtttttggctttcttttctgtgtttcagtgtattatttttttggca-tgtatgtgtgtgtggtttttgac 10774050  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 15508957 - 15508909
Alignment:
Q  493 tgagtgttagagagattgttcaaaagaaagtgttgctgacatttctcaa 541  Q
    ||||||||||| ||| ||||||||||| ||||||||| ||||| |||||    
T  15508957 tgagtgttagaaagagtgttcaaaagagagtgttgctaacattcctcaa 15508909  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 13407364 - 13407328
Alignment:
Q  493 tgagtgttagagagattgttcaaaagaaagtgttgct 529  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  13407364 tgagtgttagagagagtgttcaaaagagagtgttgct 13407328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 38537548 - 38537512
Alignment:
Q  499 ttagagagattgttcaaaagaaagtgttgctgacatt 535  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  38537548 ttagagagagtgttcaaaagaaagtgttgctaacatt 38537512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 39016805 - 39016849
Alignment:
Q  495 agtgttagagagattgttcaaaagaaagtgttgctgacatttctc 539  Q
    |||| |||||||| ||||||||||| ||||||||| |||||||||    
T  39016805 agtgctagagagagtgttcaaaagagagtgttgctaacatttctc 39016849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 27243088 - 27243052
Alignment:
Q  493 tgagtgttagagagattgttcaaaagaaagtgttgct 529  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  27243088 tgagtgttagagagagtgttcaaaagagagtgttgct 27243052  T

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