View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_40 (Length: 251)
Name: NF1944_high_40
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42270005 - 42270244
Alignment:
| Q |
1 |
aatgctcatgcacgactaccatatttgatgtactgattgtgtactcnnnnnnnnnnnatccaaaagtactaaaagtaaatgaagaaagaatatgaggaag |
100 |
Q |
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| T |
42270005 |
aatgctcatacacgactaccatatttgatgtactgattgtgtactcttttttttt--atccaaaagtactaaaagtaaatgaagaaagaatatgaggaag |
42270102 |
T |
|
| Q |
101 |
tatacatagtacatttttatttgtctaaaaagtagtgaaaatttaacatgcttggttattataaagtaaaactagcagccctaaacaccgtagtagcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270103 |
tatacatagtacatttttatttgtctaaaaagtagtgaaaatttaacatggttggttattataaagtaaaactagcagccctaaacaccgtagtagcaaa |
42270202 |
T |
|
| Q |
201 |
cttaagccaaacccatgctggcccatcaacttatagaataat |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42270203 |
cttaagccaaacccatgctggcccatcaacttatataataat |
42270244 |
T |
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