View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_41 (Length: 249)
Name: NF1944_high_41
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 18360632 - 18360851
Alignment:
| Q |
22 |
catctaactttgccgccaaaatcgatttaacttctccaagtctttgtacctttacttttgctgggtttccgattcagaaaatatttgggagcggtctttc |
121 |
Q |
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| T |
18360632 |
catctaacttcgccgccaaaatcgatttaacttctccaagtctttgtacctttacttttgccgggtttccggttcagaaaatatttgggagcggtctttc |
18360731 |
T |
|
| Q |
122 |
gttctgttgttaaacaagtaaatatcaatacataaatgatttcaagatgacataaattcaacaggcagctagaccttgcaaatgtaaaatcatcgacaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18360732 |
gttctgttgttaaacaagtaaatatcaatacataaatgatttcaagatgacataaattcaacaggcagctagaccttgcaaatgtaaaatgatcgacaat |
18360831 |
T |
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| Q |
222 |
ctcttcaactactctctgct |
241 |
Q |
| |
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|||||||||||||||||||| |
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| T |
18360832 |
ctcttcaactactctctgct |
18360851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 36602297 - 36602078
Alignment:
| Q |
22 |
catctaactttgccgccaaaatcgatttaacttctccaagtctttgtacctttacttttgctgggtttccgattcagaaaatatttgggagcggtctttc |
121 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
36602297 |
catctaacttcgccgccaaaatcgatttaacttctccaagtctttgtacctttacttttgccgggtttccggttcagaaaatatttgggagcggtctttc |
36602198 |
T |
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| Q |
122 |
gttctgttgttaaacaagtaaatatcaatacataaatgatttcaagatgacataaattcaacaggcagctagaccttgcaaatgtaaaatcatcgacaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36602197 |
gttctgttgttaaacaagtaaatatcaatacataaatgatttcaagatgacataaattcaacaggcagctagaccttgcaaatgtaaaatgatcgacaat |
36602098 |
T |
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| Q |
222 |
ctcttcaactactctctgct |
241 |
Q |
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|||||||||||||||||||| |
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| T |
36602097 |
ctcttcaactactctctgct |
36602078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 36636389 - 36636323
Alignment:
| Q |
55 |
ctccaagtctttgtacctttacttttgctgggtttccgattcagaaaatatttgggagcggtctttc |
121 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||| |||||||||||| |||||| |||||||| |
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| T |
36636389 |
ctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttc |
36636323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 35968954 - 35969041
Alignment:
| Q |
55 |
ctccaagtctttgtacctttacttttgctgggtttccgattcagaaaatatttgggagcggtctttcgttctgttgttaaacaagtaaatat |
146 |
Q |
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|||| |||||||| ||||||||| || | || |||| | ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |
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| T |
35968954 |
ctcctagtctttgcacctttactattaccggtattcctaatcagaaaatatgtgggagcggtctttc-ttc---tgttaaacaagtaaatat |
35969041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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