View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_48 (Length: 240)
Name: NF1944_high_48
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 31696967 - 31697190
Alignment:
| Q |
17 |
attgttaagccatcaagcatatttgagttaaatttggatggttctggatattatttagacgaaatctcatgattttcatcgttatctccttattctttct |
116 |
Q |
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| T |
31696967 |
attgttaagccatcaagcatatttgacttaaatttggatggttctggatattatttagacgaaatctcatgattttcatcgttatctccttattctttct |
31697066 |
T |
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| Q |
117 |
tcgaagacgatgttgtgtcataataactttcatgannnnnnncttaactttcgctcaaactttctttatcatcttcattcttttaaactccctatcttaa |
216 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31697067 |
tcgaagacgatgttgcgtcataataactttcatgatttttttcttaactttcgctcaaactttctttatcatcttcattcttttaaactccctatcttaa |
31697166 |
T |
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| Q |
217 |
catgagtggcttctacgttgattt |
240 |
Q |
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||||||||||||||| |||||||| |
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| T |
31697167 |
catgagtggcttctatgttgattt |
31697190 |
T |
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