View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_5 (Length: 570)
Name: NF1944_high_5
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 277 - 564
Target Start/End: Complemental strand, 36123912 - 36123626
Alignment:
| Q |
277 |
taacatttgagaaatgaacatatgtgtaagacattgtgggggtgacattgacaaggtcatgtcctgcttaggtcctgcaaggcatgagctggttaggccg |
376 |
Q |
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| T |
36123912 |
taacatttgagaaatgaacatatgtgtaagacattgtgggg-tgacattgacaaggtcatgtcctgcttaggtcctgcaaggcatgagctggttaggccg |
36123814 |
T |
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| Q |
377 |
gcttaagaatgtttggacttaatttccaatgatatgattttgttcaatatagttgttattattatattttgggagtggcctcgttacacaatgttttctc |
476 |
Q |
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| T |
36123813 |
gcttaagaatgtttggacttaatttccaatgatatgattttgttcaatatagttgttattattatattttgggagtggcctcgttacacaatgttttctc |
36123714 |
T |
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| Q |
477 |
ttgttattggtgagaatgatacttctataacattggtcttctctaaaataatttattttttaggggatgatatatctagaattattta |
564 |
Q |
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| T |
36123713 |
ttgttattggtgagaatgatacttctataacattggtcttctctaaaataatttattttttaggggatgatatatctagaataattta |
36123626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 36124172 - 36123994
Alignment:
| Q |
17 |
aatagaatcgttactccaattgtttaaagcatctgcattggataagaagcttttgaagttcactagaatttgagcatctgtgtcagctgttgaggatggt |
116 |
Q |
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| T |
36124172 |
aatagaatcgttactccaattgtttaaagcatctgcattggataagaagcttttgaagttcactagaatttgagcatctgtgtcagctgttgaggatggt |
36124073 |
T |
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| Q |
117 |
aagaaacaaaaggctataatgaagagaatgataatagagatgaattctctttcatgaaacatgattagagttaagatgg |
195 |
Q |
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| T |
36124072 |
aagaaacaaaaggctatcatgaagagaatgataatagagatgaattctctttcatgaaacatgattagagttaagatgg |
36123994 |
T |
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